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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G000327

染色体: Chr07 坐标: 2226616-2232780 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G000327
名称SmilChr07G000327
描述peroxisomal adenine nucleotide carrier 1-like
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向2226616 - 2232780 / +

ID 对照

NCBI Gene IDLOC130991523
GeneID130991523
locus_tag-
NCBI NameLOC130991523
原始查询SmilChr07G000327

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述peroxisomal adenine nucleotide carrier 1-like
产物peroxisomal adenine nucleotide carrier 1-like
ArabidopsisAT3G05290 (PNC1)
peroxisomal adenine nucleotide carrier 1 [Source:NCBI gene (formerly Entrezgene);Acc:819693]
identity=66.5; qcov=1.01; evalue=5.73e-157; confidence=high
RiceOs05g0392700
-
identity=63.4; qcov=1; evalue=2.23e-142; confidence=high
GOGO:0005347 (ATP transmembrane transporter activity); GO:0005778 (peroxisomal membrane); GO:0006635 (fatty acid beta-oxidation); GO:0007031 (peroxisome organization); GO:0015217 (ADP transmembrane transporter activity); GO:0015866 (ADP transport); GO:0015867 (ATP transport); GO:0055085 (transmembrane transport)
KEGGsmil04146 (Peroxisome - Salvia miltiorrhiza (redroot sage))
PfamPF00153 (Mito_carr)
InterPro-
eggNOG-
NRGeneID:130991523

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Peroxisome 过氧化物酶体 0.80000 XP_057771768.1
2 Peroxisome membrane 过氧化物酶体膜 0.80000 XP_057771768.1
3 Mitochondrion 线粒体 0.20000 XP_057771768.1
4 Mitochondrion membrane 线粒体膜 0.20000 XP_057771768.1
5 Nucleus 细胞核 0.00000 XP_057771768.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:2228684 AC A 1bp_deletion frameshift_variant 1 A19
Chr7:2228684 AC A 1bp_deletion CDS_variant 1 A19
Chr7:2230071 G A EMS_canonical_SNV CDS_variant 1 C41
Chr7:2230146 C T EMS_canonical_SNV CDS_variant 1 B28
Chr7:2230240 G A EMS_canonical_SNV CDS_variant 5 A20,B118,C43,C44,C45
Chr7:2230613 C T EMS_canonical_SNV CDS_variant 1 D7
Chr7:2231155 C T EMS_canonical_SNV CDS_variant 1 B74
Chr7:2231315 C T EMS_canonical_SNV CDS_variant 1 B32
Chr7:2231352 C T EMS_canonical_SNV CDS_variant 1 B37

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057771768.1
319 aa
N
1
160
319
Mito_carr
Mito_carr
Mito_carr
C
PF00153 Mito_carr 8-97 aa PF00153 Mito_carr 105-188 aa PF00153 Mito_carr 204-297 aa
XP_057771769.1
319 aa
N
1
160
319
Mito_carr
Mito_carr
Mito_carr
C
PF00153 Mito_carr 8-97 aa PF00153 Mito_carr 105-188 aa PF00153 Mito_carr 204-297 aa
XP_057771770.1
319 aa
N
1
160
319
Mito_carr
Mito_carr
Mito_carr
C
PF00153 Mito_carr 8-97 aa PF00153 Mito_carr 105-188 aa PF00153 Mito_carr 204-297 aa
XP_057771771.1
319 aa
N
1
160
319
Mito_carr
Mito_carr
Mito_carr
C
PF00153 Mito_carr 8-97 aa PF00153 Mito_carr 105-188 aa PF00153 Mito_carr 204-297 aa
XP_057771772.1
319 aa
N
1
160
319
Mito_carr
Mito_carr
Mito_carr
C
PF00153 Mito_carr 8-97 aa PF00153 Mito_carr 105-188 aa PF00153 Mito_carr 204-297 aa
XP_057771773.1
319 aa
N
1
160
319
Mito_carr
Mito_carr
Mito_carr
C
PF00153 Mito_carr 8-97 aa PF00153 Mito_carr 105-188 aa PF00153 Mito_carr 204-297 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057771768.1 Pfam PF00153 Mito_carr Repeat 8 97 9.7e-43 144.6 Mitochondrial carrier protein
XP_057771768.1 Pfam PF00153 Mito_carr Repeat 105 188 9.7e-43 144.6 Mitochondrial carrier protein
XP_057771768.1 Pfam PF00153 Mito_carr Repeat 204 297 9.7e-43 144.6 Mitochondrial carrier protein
XP_057771769.1 Pfam PF00153 Mito_carr Repeat 8 97 9.7e-43 144.6 Mitochondrial carrier protein
XP_057771769.1 Pfam PF00153 Mito_carr Repeat 105 188 9.7e-43 144.6 Mitochondrial carrier protein
XP_057771769.1 Pfam PF00153 Mito_carr Repeat 204 297 9.7e-43 144.6 Mitochondrial carrier protein
XP_057771770.1 Pfam PF00153 Mito_carr Repeat 8 97 9.7e-43 144.6 Mitochondrial carrier protein
XP_057771770.1 Pfam PF00153 Mito_carr Repeat 105 188 9.7e-43 144.6 Mitochondrial carrier protein
XP_057771770.1 Pfam PF00153 Mito_carr Repeat 204 297 9.7e-43 144.6 Mitochondrial carrier protein
XP_057771771.1 Pfam PF00153 Mito_carr Repeat 8 97 9.7e-43 144.6 Mitochondrial carrier protein
XP_057771771.1 Pfam PF00153 Mito_carr Repeat 105 188 9.7e-43 144.6 Mitochondrial carrier protein
XP_057771771.1 Pfam PF00153 Mito_carr Repeat 204 297 9.7e-43 144.6 Mitochondrial carrier protein
XP_057771772.1 Pfam PF00153 Mito_carr Repeat 8 97 9.7e-43 144.6 Mitochondrial carrier protein
XP_057771772.1 Pfam PF00153 Mito_carr Repeat 105 188 9.7e-43 144.6 Mitochondrial carrier protein
XP_057771772.1 Pfam PF00153 Mito_carr Repeat 204 297 9.7e-43 144.6 Mitochondrial carrier protein
XP_057771773.1 Pfam PF00153 Mito_carr Repeat 8 97 9.7e-43 144.6 Mitochondrial carrier protein
XP_057771773.1 Pfam PF00153 Mito_carr Repeat 105 188 9.7e-43 144.6 Mitochondrial carrier protein
XP_057771773.1 Pfam PF00153 Mito_carr Repeat 204 297 9.7e-43 144.6 Mitochondrial carrier protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA
XM_057915790.1
TACCTTCACATAAAAACTTATACTTCAATTCACACTTCCAATCTCATCAAAAATAGCAACAATTGAAAATAAACAGAAATGCCAATTAACTCTATGATCCATTTTTTTGGTTATTGCGGTTCCATCGTTGAATGTTATTCCATAAAGAGTTCAATTGGTAAGACGGTATTTCACTTTTCAACCAACGCAACGAGTCAGTCTGAATCACTTAAGAAGGGATTTCTTGAAATCTAACTTGAGCATGGGGTATTACAAATTTG...
XM_057915785.1
TACCTTCACATAAAAACTTATACTTCAATTCACACTTCCAATCTCATCAAAAATAGCAACAATTGAAAATAAACAGAAATGCCAATTAACTCTATGATCCATTTTTTTGGTTATTGCGGTTCCATCGTTGAATGTTATTCCATAAAGAGTTCAATTGGTAAGACGGTATTTCACTTTTCAACCAACGCAACGAGTCAGTCTGAATCACTTAAGAAGGGATTTCTTGAAATCTAACTTGAGCATGGGGTATTACAAATTTG...

CDS

6 records

下载 CDS FASTA
LOC130991523
ATGGCGATTGATATGGAGTCGTTAGTGGAGGCGACATCGGGTGCGGTAGGTGCACTGGTCAGCACCACCATCTTGTATCCGCTCGACACATGTAAAACTAGGTATCAAGCTGAGAATCGAGCTCATCACCACCAAAGATACAGGAATATTTCAGATGTTCTGTGGGAAGCAATATCCAAAGGTCAAGTACTGTCATTGTACCAGGGGCTGGGCACGAAGAACTTGCAGTCCTTCATTTCACAATTTATCTACTTCTATGG...
LOC130991523
ATGGCGATTGATATGGAGTCGTTAGTGGAGGCGACATCGGGTGCGGTAGGTGCACTGGTCAGCACCACCATCTTGTATCCGCTCGACACATGTAAAACTAGGTATCAAGCTGAGAATCGAGCTCATCACCACCAAAGATACAGGAATATTTCAGATGTTCTGTGGGAAGCAATATCCAAAGGTCAAGTACTGTCATTGTACCAGGGGCTGGGCACGAAGAACTTGCAGTCCTTCATTTCACAATTTATCTACTTCTATGG...

Protein

6 records

下载 Protein FASTA
XP_057771768.1
MAIDMESLVEATSGAVGALVSTTILYPLDTCKTRYQAENRAHHHQRYRNISDVLWEAISKGQVLSLYQGLGTKNLQSFISQFIYFYGYSFFKRLYLRESKSKSIGTAANLLIAAAAGTCTAIATQPLDTASSRMQTSDFGKSKGLWQSLSEGTFSDAFEGLGVSLLLTANPSIQYTVFDQLKNRLLKSNMEKQRDDVSSPEAISAFSAFAYGAVSKCIATCLTYPAIRCKVVIQSAKSDESEDGKRQSRPRNSITGTLCS...
XP_057771769.1
MAIDMESLVEATSGAVGALVSTTILYPLDTCKTRYQAENRAHHHQRYRNISDVLWEAISKGQVLSLYQGLGTKNLQSFISQFIYFYGYSFFKRLYLRESKSKSIGTAANLLIAAAAGTCTAIATQPLDTASSRMQTSDFGKSKGLWQSLSEGTFSDAFEGLGVSLLLTANPSIQYTVFDQLKNRLLKSNMEKQRDDVSSPEAISAFSAFAYGAVSKCIATCLTYPAIRCKVVIQSAKSDESEDGKRQSRPRNSITGTLCS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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