Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000329`

染色体: Chr07 坐标: 2240045-2244494 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000329`
名称	SmilChr07G000329
描述	glucose-1-phosphate adenylyltransferase large subunit 3, chloroplastic/amyloplastic
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	2240045 - 2244494 / `+`

ID 对照

NCBI Gene ID	`LOC130991526`
GeneID	`130991526`
locus_tag	`-`
NCBI Name	`LOC130991526`
原始查询	`SmilChr07G000329`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	glucose-1-phosphate adenylyltransferase large subunit 3, chloroplastic/amyloplastic
产物	glucose-1-phosphate adenylyltransferase large subunit 3%2C chloroplastic/amyloplastic
Arabidopsis	`AT5G19220` (APL1) ADP glucose pyrophosphorylase large subunit 1 [Source:NCBI gene (formerly Entrezgene);Acc:832042] identity=76.7; qcov=1.01; evalue=0; confidence=high
Rice	`Os03g0735000` (OsAGPL1) - identity=82.2; qcov=0.854; evalue=0; confidence=high
GO	GO:0005978 (glycogen biosynthetic process); GO:0008878 (glucose-1-phosphate adenylyltransferase activity)
KEGG	smil00500 (Starch and sucrose metabolism - Salvia miltiorrhiza (redroot sage)); smil00520 (Amino sugar and nucleotide sugar metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01250 (Biosynthesis of nucleotide sugars - Salvia miltiorrhiza (redroot sage))
Pfam	PF00483 (NTP_transferase); PF24894 (Hexapep_GlmU); PF25247 (LbH_GLGC)
InterPro	-
eggNOG	-
NR	GeneID:130991526

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057771776.1`
2	Cytoplasm	细胞质	0.60000	`XP_057771776.1`
3	Chloroplast	叶绿体	0.40000	`XP_057771776.1`
4	Nucleus	细胞核	0.00000	`XP_057771776.1`
5	Chromosome	染色体	0.00000	`XP_057771776.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:2240864`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B54
`Chr7:2241385`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr7:2242064`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B30
`Chr7:2244071`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B63,C76

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057771776.1

521 aa

260

521

NTP_transferase

LbH_GLGC

Hexapep_GlmU

PF00483 NTP_transferase 90-367 aa PF25247 LbH_GLGC 386-520 aa PF24894 Hexapep_GlmU 395-508 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057771776.1`	Pfam	`PF00483`	NTP_transferase	Family	90	367	1.1e-67	228.9	Nucleotidyl transferase
`XP_057771776.1`	Pfam	`PF25247`	LbH_GLGC	Repeat	386	520	2.2e-52	177.2	GLGC left-handed parallel beta-helix domain
`XP_057771776.1`	Pfam	`PF24894`	Hexapep_GlmU	Repeat	395	508	1.3e-08	35.6	GlmU-like, C-terminal hexapeptide

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057915793.1
AATATGGATAAACTGCATCAATGGCATGCAATCCATGTAAGCAATATAACACACAAACAAAAGACTCTTCTTCTTTCCTTTTCTTCTTTCTTCATATATACATGAAAACCTCACCTCCACTGCAGAAACTAGCCTGTTAAAATGGCAGTCACTGCCGACGGCCGCGTCGCCCTGTCTGCCACGGGGCAGCTGCGCCGCCCCGCAAGATCTTACGCTCGAAGCGGGAGGCTAGTGAAGTTCGGCAATGGAGAGCTCATGGG...

CDS

1 records

下载 CDS FASTA

LOC130991526
ATGGCAGTCACTGCCGACGGCCGCGTCGCCCTGTCTGCCACGGGGCAGCTGCGCCGCCCCGCAAGATCTTACGCTCGAAGCGGGAGGCTAGTGAAGTTCGGCAATGGAGAGCTCATGGGACAGAAGCTCAAGTTTGCACCAATTCAGCAGAGGAAGAGTGAGAATGCTATTAGGAGCCATGTCTGCAACACACTCATAGCTGACTTGGCAGGTGAGGCCAAGTTGAGGGACCTGGAGATGGAGAAGAGGGATCCGAGGAC...

Protein

1 records

下载 Protein FASTA

XP_057771776.1
MAVTADGRVALSATGQLRRPARSYARSGRLVKFGNGELMGQKLKFAPIQQRKSENAIRSHVCNTLIADLAGEAKLRDLEMEKRDPRTVVAIILGGGAGTRLFPLTKRRAKPAVPMGGAYRLIDVPMSNCINSGINKVYILTQFNSASLNRHLARAYNFGSGVSFGDGYVEVLAATQTPGQAGKNWFQGTADAVRQFHWLFEDPRSKDIEDVLILSGDHLYRMDYMDFVQSHRQSGADITLSSLPIDESRASDFGLMKIDN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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