Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000337`

染色体: Chr07 坐标: 2279408-2283615 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000337`
名称	SmilChr07G000337
描述	ATP-dependent (S)-NAD(P)H-hydrate dehydratase
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	2279408 - 2283615 / `+`

ID 对照

NCBI Gene ID	`LOC130991535`
GeneID	`130991535`
locus_tag	`-`
NCBI Name	`LOC130991535`
原始查询	`SmilChr07G000337`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ATP-dependent (S)-NAD(P)H-hydrate dehydratase
产物	ATP-dependent (S)-NAD(P)H-hydrate dehydratase
Arabidopsis	`AT5G19150` (AT5G19150) pfkB-like carbohydrate kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:832035] identity=74.6; qcov=0.933; evalue=8.77e-157; confidence=high
Rice	`Os11g0276300` - identity=71.3; qcov=0.926; evalue=2.64e-155; confidence=high
GO	GO:0047453 (ATP-dependent NAD(P)H-hydrate dehydratase activity); GO:0110051 (metabolite repair)
KEGG	-
Pfam	PF01256 (Carb_kinase)
InterPro	-
eggNOG	-
NR	GeneID:130991535

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057771785.1`
2	Cytoplasm	细胞质	1.00000	`XP_057771786.1`
3	Nucleus	细胞核	0.80000	`XP_057771786.1`
4	Mitochondrion matrix	线粒体基质	0.40000	`XP_057771785.1`
5	Chromosome	染色体	0.00000	`XP_057771786.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:2280004`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C29
`Chr7:2280066`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B95
`Chr7:2280132`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C78,C85
`Chr7:2280557`	`AG`	`A`	1bp_deletion	frameshift_variant	1	C48
`Chr7:2280557`	`AG`	`A`	1bp_deletion	CDS_variant	1	C48
`Chr7:2280558`	`G`	`GA`	1bp_insertion	frameshift_variant	112	A1,A10,A11,A14,A2,A20,A22,A24,A25,A4,A5,A6,A7,A9,B10,B105,B109,B11,B111,B112,B115,B120,B121,B124,B130,B132,B133,B134,B138,B140,B15,B16,B18,B21,B22,B24,B26,B28,B30,B31,B32,B34,B35,B37,B41,B42,B43,B46,B47,B48,B51,B54,B56,B59,B6,B62,B68,B69,B70,B71,B75,B76,B78,B79,B80,B83,B9,B90,B92,B96,B98,C11,C12,C13,C2,C25,C27,C28,C3,C30,C31,C33,C35,C36,C37,C40,C43,C44,C46,C47,C49,C50,C51,C52,C53,C55,C57,C58,C59,C6,C61,C62,C67,C69,C71,C73,C75,C79,C80,D2,D6,D9
`Chr7:2281303`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B136
`Chr7:2281342`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B122,C34
`Chr7:2281372`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C33,C46
`Chr7:2281530`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C70,D11
`Chr7:2281616`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B4,C15
`Chr7:2282280`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B111,D2

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057771785.1

361 aa

180

361

Carb_kinase

PF01256 Carb_kinase 76-349 aa

XP_057771786.1

325 aa

162

325

Carb_kinase

PF01256 Carb_kinase 40-313 aa

XP_057771788.1

312 aa

156

312

Carb_kinase

PF01256 Carb_kinase 27-300 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057771785.1`	Pfam	`PF01256`	Carb_kinase	Domain	76	349	1.2e-44	153.3	NAD(P)H-hydrate dehydratase
`XP_057771786.1`	Pfam	`PF01256`	Carb_kinase	Domain	40	313	8.5e-45	153.8	NAD(P)H-hydrate dehydratase
`XP_057771788.1`	Pfam	`PF01256`	Carb_kinase	Domain	27	300	7.5e-45	154.0	NAD(P)H-hydrate dehydratase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057915803.1
AATGTTCAGGTAAGTAAATAATTAACAACAAATAAAGTTACTGACTTGATGGAATTGAATTCTTTATTTTTCACTAACAATTATTTACAATTTTTATTGAAAATGAGACTGTGGAGTTCGAATTTTCACTCTAGTGCAATGAGTTTATAAACAATGTGAAATATTTTTTTCTTTATTTTGAAGATAATCAATAATAGTTTTCCGAATTTTCATTTTTCCAGGAATTTAGTTGCAGGGAATCCTTCTTATTATTAAATATA...

XM_057915802.1
GAAGATAATCAATAATAGTTTTCCGAATTTTCATTTTTCCAGGAATTTAGTTGCAGGGAATCCTTCTTATTATTAAATATATGAGTTAATATGAATAAAAAAAACTTAGCACCTTCACAGTTAGCATTCACAGATTGAATGATCATCTGTTTTTCCTTTCGATCCAAGCATCCAATTCACTCGGTTTTTAAGAAAATTTTATGGTGGGATTATCGGGTGCAGTAATCAGGAGGCAGCAGTTCTTGATTAGGTGCTTAGGA...

CDS

3 records

下载 CDS FASTA

LOC130991535
ATGGTGGGATTATCGGGTGCAGTAATCAGGAGGCAGCAGTTCTTGATTAGGTGCTTAGGAGATTACAGTGGTAGCAGCAAGAATATCTGCAATTCTACCACCATAAAAATGCAATCTTTACTGAGTGGTGGTAGCCCTTCAATGGAGGTTGATGCTGTCACCATCTTGAAATCAATCACTCCATCTCTAGAACCTTCCAGGCATAAAGGCCAAGCTGGGAAGATCGCAGTTGTAGGAGGTTGCCGTGAATACACTGGTGC...

LOC130991535
ATGCAATCTTTACTGAGTGGTGGTAGCCCTTCAATGGAGGTTGATGCTGTCACCATCTTGAAATCAATCACTCCATCTCTAGAACCTTCCAGGCATAAAGGCCAAGCTGGGAAGATCGCAGTTGTAGGAGGTTGCCGTGAATACACTGGTGCACCGTACTTTTCTGCTATTTCAGCTTTAAAAATCGGTGCTGATTTGTCGCACGTGTTCTGCACAAAAGATGCCGCCCCGGTTATTAAAGGCTACAGTCCCGAGTTAAT...

Protein

3 records

下载 Protein FASTA

XP_057771785.1
MVGLSGAVIRRQQFLIRCLGDYSGSSKNICNSTTIKMQSLLSGGSPSMEVDAVTILKSITPSLEPSRHKGQAGKIAVVGGCREYTGAPYFSAISALKIGADLSHVFCTKDAAPVIKGYSPELIVHPILEESYSVRDEDKKSVSAKVIEEVDKWMERFDCLVIGPGLGRDPFLLDCVSNIMKRARQSNVPMVIDGDGLFLVTNSLDLISGYPLAVLTPNVNEYKRLVQKVLQCDVNDLDGAQQLLSLARGVGGATILRKGG...

XP_057771786.1
MQSLLSGGSPSMEVDAVTILKSITPSLEPSRHKGQAGKIAVVGGCREYTGAPYFSAISALKIGADLSHVFCTKDAAPVIKGYSPELIVHPILEESYSVRDEDKKSVSAKVIEEVDKWMERFDCLVIGPGLGRDPFLLDCVSNIMKRARQSNVPMVIDGDGLFLVTNSLDLISGYPLAVLTPNVNEYKRLVQKVLQCDVNDLDGAQQLLSLARGVGGATILRKGGSDFISNGETVHAVSSFGSPRRCGGQGDILSGSVAVF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器