当前解析结果
SmilChr07G000347| 统一新 Gene ID | SmilChr07G000347 |
|---|---|
| 名称 | SmilChr07G000347 |
| 描述 | dual specificity protein phosphatase 1-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 2353086 - 2356337 / + |
| NCBI Gene ID | LOC130991547 |
|---|---|
| GeneID | 130991547 |
| locus_tag | - |
| NCBI Name | LOC130991547 |
| 原始查询 | SmilChr07G000347 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | dual specificity protein phosphatase 1-like |
| 产物 | dual specificity protein phosphatase 1-like |
| Arabidopsis | AT3G23610 (DSPTP1)dual specificity protein phosphatase 1 [Source:NCBI gene (formerly Entrezgene);Acc:821941] identity=59.3; qcov=0.866; evalue=1.55e-71; confidence=high |
| Rice | Os01g0390900 (OsDsPTP1)- identity=56.6; qcov=0.85; evalue=9.65e-63; confidence=high |
| GO | GO:0005737 (cytoplasm); GO:0006470 (protein dephosphorylation); GO:0008330 (protein tyrosine/threonine phosphatase activity); GO:0017017 (MAP kinase tyrosine/serine/threonine phosphatase activity); GO:0043409 (negative regulation of MAPK cascade) |
| KEGG | - |
| Pfam | PF00782 (DSPc) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991547 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057771807.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057771807.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057771807.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057771807.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057771807.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:2354185 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A21,B101 |
Chr7:2354399 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr7:2354786 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B4,C15 |
Chr7:2354822 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C46,C5 |
Chr7:2355793 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B133,D6 |
Chr7:2355823 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B26,B8,C23 |
Chr7:2355841 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B117,B127,C54,C87 |
Chr7:2356065 |
G |
GA |
1bp_insertion | CDS_variant | 5 | B133,B26,B8,C23,D6 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057771807.1PF00782
DSPc 36-165 aa
XP_057771808.1PF00782
DSPc 36-165 aa
XP_057771809.1PF00782
DSPc 36-165 aa
XP_057771810.1PF00782
DSPc 36-165 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771807.1 |
Pfam | PF00782 |
DSPc | Domain | 36 | 165 | 9.7e-34 | 116.8 | Dual specificity phosphatase, catalytic domain |
XP_057771808.1 |
Pfam | PF00782 |
DSPc | Domain | 36 | 165 | 9.7e-34 | 116.8 | Dual specificity phosphatase, catalytic domain |
XP_057771809.1 |
Pfam | PF00782 |
DSPc | Domain | 36 | 165 | 9.7e-34 | 116.8 | Dual specificity phosphatase, catalytic domain |
XP_057771810.1 |
Pfam | PF00782 |
DSPc | Domain | 36 | 165 | 9.7e-34 | 116.8 | Dual specificity phosphatase, catalytic domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。