当前解析结果
SmilChr07G000350| 统一新 Gene ID | SmilChr07G000350 |
|---|---|
| 名称 | SmilChr07G000350 |
| 描述 | heavy metal-associated isoprenylated plant protein 33-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 2394943 - 2397568 / - |
| NCBI Gene ID | LOC130991551 |
|---|---|
| GeneID | 130991551 |
| locus_tag | - |
| NCBI Name | LOC130991551 |
| 原始查询 | SmilChr07G000350 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | heavy metal-associated isoprenylated plant protein 33-like |
| 产物 | heavy metal-associated isoprenylated plant protein 33-like |
| Arabidopsis | AT3G06130 (AT3G06130)Heavy metal transport/detoxification superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:819786] identity=60; qcov=0.378; evalue=1.24e-45; confidence=low |
| Rice | Os11g0147500- identity=65.7; qcov=0.215; evalue=4.26e-36; confidence=weak |
| GO | GO:0046872 (metal ion binding) |
| KEGG | - |
| Pfam | PF00403 (HMA) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991551 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.60000 | XP_057771815.1 |
| 2 | Nucleus | 细胞核 | 0.40000 | XP_057771815.1 |
| 3 | Cytoplasmic granule | 细胞质颗粒 | 0.20000 | XP_057771815.1 |
| 4 | Cytoplasmic ribonucleoprotein granule | Cytoplasmic ribonucleoprotein granule | 0.20000 | XP_057771815.1 |
| 5 | P-body | P-body | 0.20000 | XP_057771815.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:2395316 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B50 |
Chr7:2395336 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B50 |
Chr7:2395375 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C85 |
Chr7:2395437 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B50,C14,C42 |
Chr7:2395483 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B112,C2 |
Chr7:2395495 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B59,B75,C70 |
Chr7:2395496 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B50,C14 |
Chr7:2395516 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B50,C14 |
Chr7:2395534 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B50,C14 |
Chr7:2395588 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C29,C80 |
Chr7:2395606 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B112,C2 |
Chr7:2395660 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C45 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057771815.1PF00403
HMA 14-70 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771815.1 |
Pfam | PF00403 |
HMA | Domain | 14 | 70 | 1.5e-13 | 51.6 | Heavy-metal-associated domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。