Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G000350

染色体: Chr07 坐标: 2394943-2397568 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G000350
名称SmilChr07G000350
描述heavy metal-associated isoprenylated plant protein 33-like
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向2394943 - 2397568 / -

ID 对照

NCBI Gene IDLOC130991551
GeneID130991551
locus_tag-
NCBI NameLOC130991551
原始查询SmilChr07G000350

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述heavy metal-associated isoprenylated plant protein 33-like
产物heavy metal-associated isoprenylated plant protein 33-like
ArabidopsisAT3G06130 (AT3G06130)
Heavy metal transport/detoxification superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:819786]
identity=60; qcov=0.378; evalue=1.24e-45; confidence=low
RiceOs11g0147500
-
identity=65.7; qcov=0.215; evalue=4.26e-36; confidence=weak
GOGO:0046872 (metal ion binding)
KEGG-
PfamPF00403 (HMA)
InterPro-
eggNOG-
NRGeneID:130991551

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasm 细胞质 0.60000 XP_057771815.1
2 Nucleus 细胞核 0.40000 XP_057771815.1
3 Cytoplasmic granule 细胞质颗粒 0.20000 XP_057771815.1
4 Cytoplasmic ribonucleoprotein granule Cytoplasmic ribonucleoprotein granule 0.20000 XP_057771815.1
5 P-body P-body 0.20000 XP_057771815.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:2395316 G A EMS_canonical_SNV CDS_variant 1 B50
Chr7:2395336 G A EMS_canonical_SNV CDS_variant 1 B50
Chr7:2395375 C T EMS_canonical_SNV CDS_variant 1 C85
Chr7:2395437 G A EMS_canonical_SNV CDS_variant 3 B50,C14,C42
Chr7:2395483 G A EMS_canonical_SNV CDS_variant 2 B112,C2
Chr7:2395495 G A EMS_canonical_SNV CDS_variant 3 B59,B75,C70
Chr7:2395496 C T EMS_canonical_SNV CDS_variant 2 B50,C14
Chr7:2395516 C T EMS_canonical_SNV CDS_variant 2 B50,C14
Chr7:2395534 G A EMS_canonical_SNV CDS_variant 2 B50,C14
Chr7:2395588 G A EMS_canonical_SNV CDS_variant 2 C29,C80
Chr7:2395606 G A EMS_canonical_SNV CDS_variant 2 B112,C2
Chr7:2395660 G A EMS_canonical_SNV CDS_variant 1 C45

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057771815.1
502 aa
N
1
251
502
HMA
C
PF00403 HMA 14-70 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057771815.1 Pfam PF00403 HMA Domain 14 70 1.5e-13 51.6 Heavy-metal-associated domain

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057915832.1
TAACATTATGTGTGTGTTTTGTGGGAGAGAGAAGAAATTACATCCATCCTCCTCTGTTTTGAGAAAACACAAAATTTAATAAGAATGGTGAGATTTGATAATTAAAAAAAAAAAATAGGCATAAATAAAGCCCCGAAACCAAGGGAGTGAGAGTGTGACACCCTCTCCTCTGTGCCAGTCTGCACTTTGTTTTGTTTAGTCTCTCTCTCTTCTCTCTCTCTCTCTCACAGACACACACATTGGCCACTCTCTCTCTCTAA...

CDS

1 records

下载 CDS FASTA
LOC130991551
ATGAGTAAAGAAGAGTTCTTGAAGATCCAGACTTGTGTTCTCAAAGTCAATATACACTGTGACGGGTGTAAGCAAAAAGTGAAGAAAATCTTGCAGAAGATCGATGGTGTTTACACCACGAAGATAGATTCGGAGCAGGGGAAGGTGACCGTTTCCGGCAATGTCGACGCGGCCACGCTCATCAAGAAGCTTACCAAGAATGGGAAGCATGCCGAGATTTGGGGCGCCCCCAAACCCAGCTCTAACAACAACAATTCGTC...

Protein

1 records

下载 Protein FASTA
XP_057771815.1
MSKEEFLKIQTCVLKVNIHCDGCKQKVKKILQKIDGVYTTKIDSEQGKVTVSGNVDAATLIKKLTKNGKHAEIWGAPKPSSNNNNSSKNDNAKGGNNKAQPQKGGGGGGGGGGGGNNQVKGGGGGGGGGGGPPQGMTPQMLQQLQQMKGFQDLKLPPQFMKDMKLPPLNGHPNQKAMKLSLPEDEGLSDDEFDDDYDDDDDYDDDEDEDDFDDDLDDGPPPPGKMKPPPPGIMGNGAGLPPHMMMKAANAAGNGGNGKKE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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