当前解析结果
SmilChr07G000352| 统一新 Gene ID | SmilChr07G000352 |
|---|---|
| 名称 | SmilChr07G000352 |
| 描述 | probable E3 ubiquitin-protein ligase LUL4 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 2411595 - 2416283 / - |
| NCBI Gene ID | LOC130991552 |
|---|---|
| GeneID | 130991552 |
| locus_tag | - |
| NCBI Name | LOC130991552 |
| 原始查询 | SmilChr07G000352 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable E3 ubiquitin-protein ligase LUL4 |
| 产物 | probable E3 ubiquitin-protein ligase LUL4 |
| Arabidopsis | AT3G06140 (LUL4)RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:819787] identity=56; qcov=0.733; evalue=9.08e-94; confidence=high |
| Rice | Os05g0397650 (OsRFPHC-8)- identity=50.2; qcov=0.76; evalue=6.72e-81; confidence=high |
| GO | GO:0016567 (protein ubiquitination); GO:0061630 (ubiquitin protein ligase activity) |
| KEGG | - |
| Pfam | PF13639 (zf-RING_2); PF13920 (zf-C3HC4_3); PF14447 (Prok-RING_4); PF26192 (RNF157-like_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991552 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057771816.1 |
| 2 | Nucleus | 细胞核 | 0.40000 | XP_057771816.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057771817.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057771816.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057771816.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:2411948 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B114,B14,C13,D4 |
Chr7:2412138 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B93,B94,C33 |
Chr7:2412140 |
ATT |
A |
2bp_deletion | frameshift_variant | 9 | B107,B114,B140,B49,B79,B84,C36,C56,C65 |
Chr7:2412189 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A10,B101,B91,C2 |
Chr7:2412237 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B13,B91 |
Chr7:2412306 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A20,B15 |
Chr7:2412347 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C22 |
Chr7:2412576 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A14 |
Chr7:2412638 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B33,C48 |
Chr7:2412743 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B111,B35,C61,C78,C85 |
Chr7:2415804 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A10,B101,B91,C2 |
Chr7:2415813 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A7,B118,C37,C69,D5 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057771816.1PF26192
RNF157-like_N 104-264 aa
XP_057771817.1PF26192
RNF157-like_N 104-264 aa
PF13920
zf-C3HC4_3 284-330 aa
PF13639
zf-RING_2 285-325 aa
PF14447
Prok-RING_4 286-328 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771816.1 |
Pfam | PF26192 |
RNF157-like_N | Domain | 104 | 264 | 5.8e-62 | 209.4 | RNF157-like N-terminal domain |
XP_057771817.1 |
Pfam | PF26192 |
RNF157-like_N | Domain | 104 | 264 | 5.4e-62 | 209.5 | RNF157-like N-terminal domain |
XP_057771817.1 |
Pfam | PF13920 |
zf-C3HC4_3 | Domain | 284 | 330 | 2e-16 | 60.2 | Zinc finger, C3HC4 type (RING finger) |
XP_057771817.1 |
Pfam | PF13639 |
zf-RING_2 | Domain | 285 | 325 | 2.7e-07 | 31.4 | Ring finger domain |
XP_057771817.1 |
Pfam | PF14447 |
Prok-RING_4 | Family | 286 | 328 | 1.3e-06 | 28.9 | Prokaryotic RING finger family 4 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。