Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000363`

染色体: Chr07 坐标: 2483848-2490414 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000363`
名称	SmilChr07G000363
描述	mediator of RNA polymerase II transcription subunit 33A-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	2483848 - 2490414 / `-`

ID 对照

NCBI Gene ID	`LOC130991563`
GeneID	`130991563`
locus_tag	`-`
NCBI Name	`LOC130991563`
原始查询	`SmilChr07G000363`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	mediator of RNA polymerase II transcription subunit 33A-like
产物	mediator of RNA polymerase II transcription subunit 33A-like
Arabidopsis	`AT3G23590` (RFR1) REF4-related 1 [Source:NCBI gene (formerly Entrezgene);Acc:821938] identity=58.8; qcov=1.02; evalue=0; confidence=high
Rice	`Os07g0681500` (OsMED5_3) - identity=39; qcov=1.02; evalue=0; confidence=medium
GO	GO:0016592 (mediator complex); GO:2000762 (regulation of phenylpropanoid metabolic process)
KEGG	-
Pfam	PF27769 (MED33_C); PF27774 (MED33_TPR-like_mid); PF27814 (MED33_TPR-like_2nd)
InterPro	-
eggNOG	-
NR	GeneID:130991563

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057771831.1`
2	Chromosome	染色体	0.00000	`XP_057771831.1`
3	Centromere	着丝粒	0.00000	`XP_057771831.1`
4	Chromatin	染色质	0.00000	`XP_057771831.1`
5	Telomere	端粒	0.00000	`XP_057771831.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:2484064`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B93,C41
`Chr7:2484111`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr7:2484156`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C70
`Chr7:2484224`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr7:2484231`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B87
`Chr7:2484249`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B125,C32,C68
`Chr7:2484347`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B117,B127,B44,B51,B57
`Chr7:2484351`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A1,B2,B48,C86
`Chr7:2484433`	`G`	`GT`	1bp_insertion	frameshift_variant	1	C80
`Chr7:2484433`	`G`	`GT`	1bp_insertion	CDS_variant	1	C80
`Chr7:2484495`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B25,B65,C16,C87
`Chr7:2484555`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B117,B127,B44,B51,B57

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057771831.1

1317 aa

658

1317

MED33_TPR-like_2nd

MED33_TPR-like_mid

MED33_C

PF27814 MED33_TPR-like_2nd 105-288 aa PF27774 MED33_TPR-like_mid 795-1029 aa PF27769 MED33_C 1097-1272 aa

XP_057771832.1

1291 aa

646

1291

MED33_TPR-like_2nd

MED33_TPR-like_mid

MED33_C

PF27814 MED33_TPR-like_2nd 105-288 aa PF27774 MED33_TPR-like_mid 769-1003 aa PF27769 MED33_C 1071-1246 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057771831.1`	Pfam	`PF27814`	MED33_TPR-like_2nd	Repeat	105	288	1.6e-69	234.1	Mediator subunit 33 second TPR-like domain
`XP_057771831.1`	Pfam	`PF27774`	MED33_TPR-like_mid	Repeat	795	1029	1.6e-123	411.2	Mediator subunit 33 middle TPR-like domain
`XP_057771831.1`	Pfam	`PF27769`	MED33_C	Repeat	1097	1272	8.8e-74	247.9	Mediator subunit 33 C-terminal domain
`XP_057771832.1`	Pfam	`PF27814`	MED33_TPR-like_2nd	Repeat	105	288	1.6e-69	234.1	Mediator subunit 33 second TPR-like domain
`XP_057771832.1`	Pfam	`PF27774`	MED33_TPR-like_mid	Repeat	769	1003	1.6e-123	411.3	Mediator subunit 33 middle TPR-like domain
`XP_057771832.1`	Pfam	`PF27769`	MED33_C	Repeat	1071	1246	8.5e-74	247.9	Mediator subunit 33 C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057915848.1
TATTTATCTAATTAAAAAAGTGGTTGGGCAAACCATATCTACTAACATTAGCCACTTGAATCCCACTTCTTTGGGTTTGACATTCACATTTGAAAAACCAACCACTTTGCACTTTGCTCCTTTCTTGAATTTCACCCTTTTCTTTAATCCCACAAACACACACTTGCTTGAATCAAAGCTGGAATCTTTTTTCTTTCTAACCAATGCCAACTTAACCTCACCAATACACCAGGCCACCACCTTTCTCTCTCCAAAATGAA...

XM_057915849.1
TAACATTAGCCACTTGAATCCCACTTCTTTGGGTTTGACATTCACATTTGAAAAACCAACCACTTTGCACTTTGCTCCTTTCTTGAATTTCACCCTTTTCTTTAATCCCACAAACACACACTTGCTTGAATCAAAGCTGGAATCTTTTTTCTTTCTAACCAATGCCAACTTAACCTCACCAATACACCAGGCCACCACCTTTCTCTCTCCAAAATGAAGGTGATGTTGAGGTTGTGAGGAAGAAGGCAATGGAGGTGGCA...

CDS

2 records

下载 CDS FASTA

LOC130991563
ATGGAGGTGGCAACCCAGATGAGCTGCAGCATATGGGACACTATTTTGGGGCAAACTAAGGTGGCCCAAGAAAAGGGCAGTGACCCATTGCTGTGGTCAATCCAGATTTCATCCAATTTGAGCTCTGCTGGGATCACCCTACCTTGTATTGAATTAGCCAACCATTTAGTTTCACACATTTGTTGGGAAAACAATGTGCCCATTGCTTGGAAATTCTTGGAAAAGGCATTGACTCTCAAGATTGTGCCCCCCTTTCTTGT...

Protein

2 records

下载 Protein FASTA

XP_057771831.1
MEVATQMSCSIWDTILGQTKVAQEKGSDPLLWSIQISSNLSSAGITLPCIELANHLVSHICWENNVPIAWKFLEKALTLKIVPPFLVLGLLSERVIPYRGSCPAAFRLYLELLKRHAFSLKEYTNLANYDKTMFSLDEILQLSSVFGLQVNEASALLVLFVFCIVWQLVDLALDDEGLLQLAEIEPRWPVKPRDMEVDDVHDMFEGKRKEYNERLRAVNTVFAIELLGEFLQNNVTSRILHLAGQNMCTHWESFTQRMQL...

XP_057771832.1
MEVATQMSCSIWDTILGQTKVAQEKGSDPLLWSIQISSNLSSAGITLPCIELANHLVSHICWENNVPIAWKFLEKALTLKIVPPFLVLGLLSERVIPYRGSCPAAFRLYLELLKRHAFSLKEYTNLANYDKTMFSLDEILQLSSVFGLQVNEASALLVLFVFCIVWQLVDLALDDEGLLQLAEIEPRWPVKPRDMEVDDVHDMFEGKRKEYNERLRAVNTVFAIELLGEFLQNNVTSRILHLAGQNMCTHWESFTQRMQL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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