当前解析结果
SmilChr07G000371| 统一新 Gene ID | SmilChr07G000371 |
|---|---|
| 名称 | SmilChr07G000371 |
| 描述 | guanylate kinase 2, chloroplastic/mitochondrial |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 2526441 - 2528632 / + |
| NCBI Gene ID | LOC130991573 |
|---|---|
| GeneID | 130991573 |
| locus_tag | - |
| NCBI Name | LOC130991573 |
| 原始查询 | SmilChr07G000371 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | guanylate kinase 2, chloroplastic/mitochondrial |
| 产物 | guanylate kinase 2%2C chloroplastic/mitochondrial |
| Arabidopsis | AT3G06200 (AT3G06200)P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:819794] identity=56.2; qcov=0.994; evalue=2.4e-109; confidence=high |
| Rice | Os03g0320900 (V2)- identity=71.8; qcov=0.714; evalue=2.84e-115; confidence=high |
| GO | GO:0004385 (GMP kinase activity); GO:0005829 (cytosol); GO:0006163 (purine nucleotide metabolic process) |
| KEGG | smil00230 (Purine metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01232 (Nucleotide metabolism - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00625 (Guanylate_kin) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991573 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057771843.1 |
| 2 | Mitochondrion | 线粒体 | 0.40000 | XP_057771843.1 |
| 3 | Chloroplast stroma | 叶绿体基质 | 0.40000 | XP_057771843.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057771843.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057771843.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:2526753 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B11,B68,D5 |
Chr7:2526784 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B45,B82,C25 |
Chr7:2526796 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B45,B82,C25 |
Chr7:2526839 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C42 |
Chr7:2526894 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B68 |
Chr7:2527099 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | B84 |
Chr7:2527099 |
TG |
T |
1bp_deletion | CDS_variant | 1 | B84 |
Chr7:2527103 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C41 |
Chr7:2527184 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C41,C42 |
Chr7:2527256 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B123,B134,B85,C72 |
Chr7:2527272 |
GA |
G |
1bp_deletion | frameshift_variant | 1 | B37 |
Chr7:2527272 |
GA |
G |
1bp_deletion | CDS_variant | 1 | B37 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057771843.1PF00625
Guanylate_kin 117-296 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771843.1 |
Pfam | PF00625 |
Guanylate_kin | Domain | 117 | 296 | 2.6e-40 | 138.8 | Guanylate kinase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。