当前解析结果
SmilChr07G000374| 统一新 Gene ID | SmilChr07G000374 |
|---|---|
| 名称 | SmilChr07G000374 |
| 描述 | glutamine synthetase, chloroplastic |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 2545743 - 2549009 / + |
| NCBI Gene ID | LOC130991576 |
|---|---|
| GeneID | 130991576 |
| locus_tag | - |
| NCBI Name | LOC130991576 |
| 原始查询 | SmilChr07G000374 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | glutamine synthetase, chloroplastic |
| 产物 | glutamine synthetase%2C chloroplastic |
| Arabidopsis | AT5G35630 (GS2)glutamine synthetase 2 [Source:NCBI gene (formerly Entrezgene);Acc:833535] identity=85; qcov=1; evalue=0; confidence=high |
| Rice | Os04g0659100 (OsGLN2)- identity=87.4; qcov=0.903; evalue=0; confidence=high |
| GO | GO:0004356 (glutamine synthetase activity); GO:0005737 (cytoplasm); GO:0006542 (GO:0006542) |
| KEGG | smil00220 (Arginine biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00250 (Alanine, aspartate and glutamate metabolism - Salvia miltiorrhiza (redroot sage)); smil00630 (Glyoxylate and dicarboxylate metabolism - Salvia miltiorrhiza (redroot sage)); smil00910 (Nitrogen metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01230 (Biosynthesis of amino acids - Salvia miltiorrhiza (redroot sage)); smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00120 (Gln-synt_C); PF03951 (Gln-synt_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991576 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057771848.1 |
| 2 | Mitochondrion | 线粒体 | 0.80000 | XP_057771848.1 |
| 3 | Chloroplast stroma | 叶绿体基质 | 0.20000 | XP_057771848.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057771848.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057771848.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:2547100 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B75,C83 |
Chr7:2547163 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B124,B76,B8,C25 |
Chr7:2547184 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B124,B76,B8,C25 |
Chr7:2547541 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A19,D11 |
Chr7:2547947 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C20,C34 |
Chr7:2548293 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B24 |
Chr7:2548345 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B106 |
Chr7:2548489 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B122,C86 |
Chr7:2548710 |
GGC |
G |
2bp_deletion | frameshift_variant | 1 | C83 |
Chr7:2548710 |
GGC |
G |
2bp_deletion | CDS_variant | 1 | C83 |
Chr7:2548713 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B123 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057771848.1PF03951
Gln-synt_N 105-157 aa
PF00120
Gln-synt_C 185-315 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771848.1 |
Pfam | PF03951 |
Gln-synt_N | Domain | 105 | 157 | 1e-08 | 35.4 | Glutamine synthetase, beta-Grasp domain |
XP_057771848.1 |
Pfam | PF00120 |
Gln-synt_C | Domain | 185 | 315 | 1e-15 | 58.4 | Glutamine synthetase, catalytic domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。