当前解析结果
SmilChr07G000390| 统一新 Gene ID | SmilChr07G000390 |
|---|---|
| 名称 | SmilChr07G000390 |
| 描述 | uncharacterized SmilChr07G000390 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 2611406 - 2612722 / + |
| NCBI Gene ID | LOC130993037 |
|---|---|
| GeneID | 130993037 |
| locus_tag | - |
| NCBI Name | LOC130993037 |
| 原始查询 | SmilChr07G000390 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | F-box/RNI-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821153]; symbol=AT3G03030; hit=AT3G03030; species=arabidopsis; confidence=low |
| 产物 | F-box/RNI-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821153]; symbol=AT3G03030; hit=AT3G03030; species=arabidopsis; confidence=low |
| Arabidopsis | AT3G03030 (AT3G03030)F-box/RNI-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821153] identity=30.6; qcov=0.447; evalue=6.69e-08; confidence=low |
| Rice | -- |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993037 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057773741.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057773741.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057773741.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057773741.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057773741.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:2611463 |
GA |
G |
1bp_deletion | frameshift_variant | 24 | A15,A23,A5,A6,A8,B104,B105,B106,B108,B137,B21,B5,B56,B62,B92,B94,C14,C23,C32,C44,C68,C71,C73,D6 |
Chr7:2611538 |
G |
GA |
1bp_insertion | frameshift_variant | 39 | A21,A24,B1,B101,B117,B119,B123,B127,B129,B13,B136,B16,B4,B48,B52,B61,B76,B84,B85,B89,B98,C12,C21,C26,C33,C34,C38,C39,C43,C45,C46,C48,C51,C53,C60,C63,C65,C79,D4 |
Chr7:2611550 |
C |
T |
EMS_canonical_SNV | stop_gained | 89 | A10,A2,A21,A24,A3,A5,A9,B1,B101,B103,B104,B108,B119,B123,B125,B127,B128,B129,B13,B131,B134,B135,B136,B140,B16,B19,B25,B26,B32,B34,B35,B41,B42,B43,B48,B52,B54,B55,B56,B57,B58,B61,B63,B75,B76,B79,B80,B84,B85,B89,B96,B98,B99,C1,C11,C12,C15,C16,C19,C20,C21,C22,C26,C27,C33,C34,C38,C39,C42,C43,C45,C47,C48,C49,C51,C60,C63,C65,C69,C71,C72,C79,C80,C83,C84,C85,C87,D1,D4 |
Chr7:2611579 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B107,C56 |
Chr7:2611587 |
AG |
A |
1bp_deletion | frameshift_variant | 10 | B10,B132,B30,B63,C17,C26,C31,C52,C76,C77 |
Chr7:2611631 |
C |
T |
EMS_canonical_SNV | stop_gained | 5 | A15,B122,B40,B93,C39 |
Chr7:2611631 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A15,B122,B40,B93,C39 |
Chr7:2611692 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B1,C33 |
Chr7:2611702 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B24 |
Chr7:2611720 |
C |
CGG |
2bp_insertion | frameshift_variant | 2 | B140,B53 |
Chr7:2611720 |
C |
CGG |
2bp_insertion | CDS_variant | 2 | B140,B53 |
Chr7:2611756 |
G |
GA |
1bp_insertion | frameshift_variant | 1 | C25 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。