Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000395`

染色体: Chr07 坐标: 2727314-2731096 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000395`
名称	SmilChr07G000395
描述	probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	2727314 - 2731096 / `-`

ID 对照

NCBI Gene ID	`LOC130991591`
GeneID	`130991591`
locus_tag	`-`
NCBI Name	`LOC130991591`
原始查询	`SmilChr07G000395`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic
产物	probable 1-deoxy-D-xylulose-5-phosphate synthase%2C chloroplastic
Arabidopsis	`AT4G15560` (CLA1) Deoxyxylulose-5-phosphate synthase [Source:NCBI gene (formerly Entrezgene);Acc:827230] identity=87.4; qcov=0.924; evalue=0; confidence=high
Rice	`Os05g0408900` (CLA1) - identity=83.4; qcov=1; evalue=0; confidence=high
GO	GO:0008661 (1-deoxy-D-xylulose-5-phosphate synthase activity); GO:0009507 (chloroplast); GO:0015995 (chlorophyll biosynthetic process); GO:0016114 (terpenoid biosynthetic process)
KEGG	smil00730 (Thiamine metabolism - Salvia miltiorrhiza (redroot sage)); smil00900 (Terpenoid backbone biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF00676 (E1_dh); PF02779 (Transket_pyr); PF02780 (Transketolase_C); PF13292 (DXP_synthase_N)
InterPro	-
eggNOG	-
NR	GeneID:130991591

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057771864.1`
2	Chloroplast stroma	叶绿体基质	0.60000	`XP_057771864.1`
3	Mitochondrion	线粒体	0.20000	`XP_057771864.1`
4	Nucleus	细胞核	0.00000	`XP_057771864.1`
5	Chromosome	染色体	0.00000	`XP_057771864.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:2727379`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B58,C20,C21,C34,C47
`Chr7:2727403`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C41
`Chr7:2727433`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B131
`Chr7:2727447`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A8
`Chr7:2727477`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B117,B127,D11
`Chr7:2727693`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A10,B135,C45,C65
`Chr7:2727717`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B118,B120,B91,C74
`Chr7:2727718`	`C`	`CAT`	2bp_insertion	frameshift_variant	1	B77
`Chr7:2727718`	`C`	`CAT`	2bp_insertion	CDS_variant	1	B77
`Chr7:2727729`	`AT`	`A`	1bp_deletion	frameshift_variant	33	A15,A19,A3,B101,B115,B135,B137,B14,B140,B20,B24,B28,B49,B52,B59,B65,B66,B7,B73,B77,B79,B80,B86,B99,C14,C19,C5,C63,C72,C78,C85,C87,D10
`Chr7:2727796`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B100,B128,C30,C40
`Chr7:2727821`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A10,B135,C45,C65

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057771864.1

714 aa

357

714

DXP_synthase_N

E1_dh

Transket_pyr

Transketolase_C

PF13292 DXP_synthase_N 71-356 aa PF00676 E1_dh 182-242 aa PF02779 Transket_pyr 394-554 aa PF02780 Transketolase_C 572-695 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057771864.1`	Pfam	`PF13292`	DXP_synthase_N	Family	71	356	1.8e-109	366.0	1-deoxy-D-xylulose-5-phosphate synthase
`XP_057771864.1`	Pfam	`PF00676`	E1_dh	Domain	182	242	3.8e-05	23.5	Dehydrogenase E1 component
`XP_057771864.1`	Pfam	`PF02779`	Transket_pyr	Domain	394	554	2e-49	168.3	Transketolase, pyrimidine binding domain
`XP_057771864.1`	Pfam	`PF02780`	Transketolase_C	Domain	572	695	8.3e-30	104.0	Transketolase, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057915881.1
TCACTATATCTCTCTCTCACACATCACCAAAATCCACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCATATATATTACACACAAACTCAAACAGAGTGTTACTGATCTGTCCTCTGTAAATGCGCCACCCATAAAGCCATATGCACAAACCAATCCCACCAACATTTTGTTCCTTAACAATCCCTGCATTTAATCCAAGCCCTCATCATTCCCATCATTTTCACACACACACACACACACAGTGGCTAGTGTTCTTG...

CDS

1 records

下载 CDS FASTA

LOC130991591
ATGGCTTTATGCCCATTTGCATTTTCTGGGAGTTTAGTAGCTGCAGATGCTCAAAAGCACACCAATTTCTGCTCTCAGTGGCTACATGGTGCAGATCTACCATTTCACCCCTTCTGCAAGAACAGCCAGATTAGGAAAAGCTATACAGGAATTTGTGCAACACTGTCTGAAAGAGGGGAATACTTCTCACAAAAGCCTCCAACTCCCCTTTTAGACACAATCAACTATCCAATTCACATGAAAAACCTCTCCACTAAGGA...

Protein

1 records

下载 Protein FASTA

XP_057771864.1
MALCPFAFSGSLVAADAQKHTNFCSQWLHGADLPFHPFCKNSQIRKSYTGICATLSERGEYFSQKPPTPLLDTINYPIHMKNLSTKELQQLADELRSDVIFNVSKTGGHLGSSLGVIELTVALHYVFNAPQDRILWDVGHQAYPHKILTGRRDRMPSLRQTGGLSGFTKRSESDYDCFGAGHSSTTISAGLGMAVGRDLKGRKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTANLDGPTAPVGA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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