当前解析结果
SmilChr07G000400| 统一新 Gene ID | SmilChr07G000400 |
|---|---|
| 名称 | SmilChr07G000400 |
| 描述 | sugar transporter ERD6-like 16 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 2762754 - 2766447 / + |
| NCBI Gene ID | LOC130991597 |
|---|---|
| GeneID | 130991597 |
| locus_tag | - |
| NCBI Name | LOC130991597 |
| 原始查询 | SmilChr07G000400 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | sugar transporter ERD6-like 16 |
| 产物 | sugar transporter ERD6-like 16 |
| Arabidopsis | AT5G18840 (AT5G18840)Major facilitator superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:832002] identity=70.9; qcov=0.997; evalue=0; confidence=high |
| Rice | Os11g0643800- identity=65.2; qcov=1; evalue=0; confidence=high |
| GO | GO:0008643 (carbohydrate transport); GO:0016020 (membrane); GO:0051119 (sugar transmembrane transporter activity); GO:0055085 (transmembrane transport) |
| KEGG | - |
| Pfam | PF00083 (Sugar_tr); PF07690 (MFS_1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991597 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057771875.1 |
| 2 | Vacuole | 液泡 | 0.60000 | XP_057771874.1 |
| 3 | Vacuole membrane | 液泡膜 | 0.60000 | XP_057771874.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057771875.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057771875.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:2763054 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C37 |
Chr7:2763422 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B104,B48,C11,C69 |
Chr7:2763611 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr7:2763615 |
G |
GA |
1bp_insertion | frameshift_variant | 1 | B35 |
Chr7:2763615 |
G |
GA |
1bp_insertion | CDS_variant | 1 | B35 |
Chr7:2763759 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C11,C69 |
Chr7:2764035 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C57 |
Chr7:2764530 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B99,C78,C85 |
Chr7:2764532 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C44 |
Chr7:2764545 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B125,B53,D4 |
Chr7:2764755 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C2 |
Chr7:2764765 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B56,B96,C41 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057771874.1PF00083
Sugar_tr 48-468 aa
PF07690
MFS_1 55-269 aa
XP_057771875.1PF00083
Sugar_tr 2-392 aa
PF07690
MFS_1 4-177 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771874.1 |
Pfam | PF00083 |
Sugar_tr | Family | 48 | 468 | 8.6e-92 | 309.1 | Sugar (and other) transporter |
XP_057771874.1 |
Pfam | PF07690 |
MFS_1 | Family | 55 | 269 | 1.5e-24 | 87.3 | Major Facilitator Superfamily |
XP_057771875.1 |
Pfam | PF00083 |
Sugar_tr | Family | 2 | 392 | 4.3e-91 | 306.8 | Sugar (and other) transporter |
XP_057771875.1 |
Pfam | PF07690 |
MFS_1 | Family | 4 | 177 | 1.2e-19 | 71.2 | Major Facilitator Superfamily |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。