当前解析结果
SmilChr07G000404| 统一新 Gene ID | SmilChr07G000404 |
|---|---|
| 名称 | SmilChr07G000404 |
| 描述 | nucleoside hydrolase 3-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 2795895 - 2800094 / + |
| NCBI Gene ID | LOC130991600 |
|---|---|
| GeneID | 130991600 |
| locus_tag | - |
| NCBI Name | LOC130991600 |
| 原始查询 | SmilChr07G000404 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | nucleoside hydrolase 3-like |
| 产物 | nucleoside hydrolase 3-like |
| Arabidopsis | AT5G18860 (NSH3)inosine-uridine preferring nucleoside hydrolase family protein [Source:NCBI gene (formerly Entrezgene);Acc:832004] identity=60.8; qcov=1; evalue=0; confidence=high |
| Rice | Os05g0406100- identity=55.3; qcov=0.863; evalue=0; confidence=high |
| GO | GO:0016799 (hydrolase activity, hydrolyzing N-glycosyl compounds) |
| KEGG | - |
| Pfam | PF01156 (IU_nuc_hydro) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991600 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole | 液泡 | 0.60000 | XP_057771880.1 |
| 2 | Secreted | 分泌到胞外 | 0.40000 | XP_057771880.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057771880.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057771880.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057771880.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:2796072 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C70,D10 |
Chr7:2796413 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B120,B91,C74 |
Chr7:2796748 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B67 |
Chr7:2796800 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B120,B91,C74 |
Chr7:2796863 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr7:2796921 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B129,B2,C5 |
Chr7:2796930 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B38,B39 |
Chr7:2796931 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B129,B2,C5 |
Chr7:2796946 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A23,B74,D6 |
Chr7:2796948 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D9 |
Chr7:2796949 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B124,B76,C27 |
Chr7:2796988 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057771880.1PF01156
IU_nuc_hydro 38-340 aa
PF01156
IU_nuc_hydro 499-840 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771880.1 |
Pfam | PF01156 |
IU_nuc_hydro | Domain | 38 | 340 | 8.5e-75 | 252.9 | Inosine-uridine preferring nucleoside hydrolase |
XP_057771880.1 |
Pfam | PF01156 |
IU_nuc_hydro | Domain | 499 | 840 | 8.5e-75 | 252.9 | Inosine-uridine preferring nucleoside hydrolase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。