Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000413`

染色体: Chr07 坐标: 2855138-2859320 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000413`
名称	SmilChr07G000413
描述	putative E3 ubiquitin-protein ligase RF298
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	2855138 - 2859320 / `-`

ID 对照

NCBI Gene ID	`LOC130991609`
GeneID	`130991609`
locus_tag	`-`
NCBI Name	`LOC130991609`
原始查询	`SmilChr07G000413`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative E3 ubiquitin-protein ligase RF298
产物	putative E3 ubiquitin-protein ligase RF298
Arabidopsis	`AT4G03000` (AT4G03000) RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:828112] identity=38.4; qcov=0.998; evalue=1.78e-169; confidence=medium
Rice	`Os05g0141500` - identity=36.8; qcov=1.01; evalue=6.42e-161; confidence=medium
GO	-
KEGG	-
Pfam	PF13920 (zf-C3HC4_3); PF20235 (PIR2-like_helical)
InterPro	-
eggNOG	-
NR	GeneID:130991609

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.80000	`XP_057771893.1`
2	Cytosol	细胞质基质	0.40000	`XP_057771893.1`
3	Cytoplasm	细胞质	0.20000	`XP_057771893.1`
4	Chromosome	染色体	0.00000	`XP_057771893.1`
5	Centromere	着丝粒	0.00000	`XP_057771893.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:2855496`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C1,C50
`Chr7:2855536`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr7:2855600`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B81,C86
`Chr7:2855624`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B36,B97
`Chr7:2855627`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B13,B68,B98
`Chr7:2855643`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A11,B135,C64,C66
`Chr7:2855682`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A21,B101,C74
`Chr7:2855699`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C17,C42
`Chr7:2855708`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B127,B139,B66
`Chr7:2855778`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B127,B66
`Chr7:2855831`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr7:2855880`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B138

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057771893.1

904 aa

452

904

PIR2-like_helical

zf-C3HC4_3

PF20235 PIR2-like_helical 136-248 aa PF13920 zf-C3HC4_3 847-894 aa

XP_057771894.1

904 aa

452

904

PIR2-like_helical

zf-C3HC4_3

PF20235 PIR2-like_helical 136-248 aa PF13920 zf-C3HC4_3 847-894 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057771893.1`	Pfam	`PF20235`	PIR2-like_helical	Domain	136	248	2.2e-30	106.0	PIR2-like, helical domain
`XP_057771893.1`	Pfam	`PF13920`	zf-C3HC4_3	Domain	847	894	5.3e-11	42.9	Zinc finger, C3HC4 type (RING finger)
`XP_057771894.1`	Pfam	`PF20235`	PIR2-like_helical	Domain	136	248	2.2e-30	106.0	PIR2-like, helical domain
`XP_057771894.1`	Pfam	`PF13920`	zf-C3HC4_3	Domain	847	894	5.3e-11	42.9	Zinc finger, C3HC4 type (RING finger)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057915911.1
AAAAAGACAATCTTTTCTTTCCTCAAAAATAAAGAATAAGAGGAGAAGAGAGAGAGAGAGAGAGAGAGAGCAATTGAATTCTCTAAGCTTGATAGAATTTTTACTTTTTTATTAGTATTATACAGGCAAAAAACAGAGAAAAAGAAAACATACACAACTATCCATAATCTCTCCACTTACATCCCCATGCTCTTAGATTTGCCAATCGTTTGATCGCCCAAAATTCACAAGCTGCAATCGATTAGATATGGCATCAATGG...

XM_057915910.1
GAGAAGAGAGAGAGAGAGAGAGAGAGAGCAATTGAATTCTCTAAGCTTGATAGAATTTTTACTTTTTTATTAGTATTATACAGGCAAAAAACAGAGAAAAAGAAAACATACACAACTATCCATAATCTCTCCACTTACATCCCCATGCTCTTAGATTTGCCAATCGTTTGATCGCCCAAAATTCACAAGCTGCAATCGATATGGCATCAATGGTTGCAAAGGCGTGTGGCAGTACTTCCAGTCAAATGCCGGTAATGACG...

CDS

2 records

下载 CDS FASTA

LOC130991609
ATGGCATCAATGGTTGCAAAGGCGTGTGGCAGTACTTCCAGTCAAATGCCGGTAATGACGGTTCAAGAAAAGGGAAGTAGGAATAAGAGGAAATTCCGGGCTGATCCCCCGTTGGCTGATCCGAATAAGGCCATCCCTTTACCTTCGAGTGAATGCACCAGCTTTGAGTTCTCAGCCGAGAAGTATGAGAGTCAGGGGCATATGAATGGGTGTGATATGTGTTGTATAAACCAAGATAGTTCCGATCATACTCTGAAACT...

Protein

2 records

下载 Protein FASTA

XP_057771893.1
MASMVAKACGSTSSQMPVMTVQEKGSRNKRKFRADPPLADPNKAIPLPSSECTSFEFSAEKYESQGHMNGCDMCCINQDSSDHTLKLDLGLSCAVGTSEIGMSRSREEMEASADDFRDADWSDFTESGLEELVLSNLDTIFKSAVKKIIASGYSEEVATRAILRSGLWYGCKDIVSNIVDNTISFLRSGQEIDPSKEHYFEDLQQMEKYILAELVCLLREVRPFFSTGDAMWCLLICDMNVSHACAMEGDGFLGDASSNM...

XP_057771894.1
MASMVAKACGSTSSQMPVMTVQEKGSRNKRKFRADPPLADPNKAIPLPSSECTSFEFSAEKYESQGHMNGCDMCCINQDSSDHTLKLDLGLSCAVGTSEIGMSRSREEMEASADDFRDADWSDFTESGLEELVLSNLDTIFKSAVKKIIASGYSEEVATRAILRSGLWYGCKDIVSNIVDNTISFLRSGQEIDPSKEHYFEDLQQMEKYILAELVCLLREVRPFFSTGDAMWCLLICDMNVSHACAMEGDGFLGDASSNM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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