当前解析结果
SmilChr07G000430| 统一新 Gene ID | SmilChr07G000430 |
|---|---|
| 名称 | SmilChr07G000430 |
| 描述 | uncharacterized SmilChr07G000430 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 2997062 - 3001632 / - |
| NCBI Gene ID | LOC130993045 |
|---|---|
| GeneID | 130993045 |
| locus_tag | - |
| NCBI Name | LOC130993045 |
| 原始查询 | SmilChr07G000430 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein [Source:NCBI gene (formerly Entrezgene);Acc:818872]; symbol=AT2G42720; hit=AT2G42720; species=arabidopsis; confidence=low |
| 产物 | FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein [Source:NCBI gene (formerly Entrezgene);Acc:818872]; symbol=AT2G42720; hit=AT2G42720; species=arabidopsis; confidence=low |
| Arabidopsis | AT2G42720 (AT2G42720)FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein [Source:NCBI gene (formerly Entrezgene);Acc:818872] identity=26.2; qcov=0.663; evalue=1.72e-06; confidence=low |
| Rice | -- |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993045 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057773748.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057773748.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057773748.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057773748.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057773748.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:2997062 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B89,C20,C6,C9 |
Chr7:2997137 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B78,C1 |
Chr7:2997170 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C33,C46 |
Chr7:2997175 |
TA |
T |
1bp_deletion | frameshift_variant | 7 | B107,B23,B68,B78,C1,C5,C54 |
Chr7:2997213 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B68,B78,C1 |
Chr7:2997228 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | B99 |
Chr7:2997228 |
AC |
A |
1bp_deletion | CDS_variant | 1 | B99 |
Chr7:2997321 |
AT |
A |
1bp_deletion | frameshift_variant | 25 | A20,A21,A8,B1,B10,B101,B107,B121,B122,B23,B46,B59,B69,B72,B75,B90,B92,C21,C28,C3,C38,C50,C54,C55,C83 |
Chr7:2997337 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B127,B66 |
Chr7:2997357 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B107,B23,B75,C5,C54 |
Chr7:2997359 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B78,C1,D11 |
Chr7:2997365 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B78,C1 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。