当前解析结果
SmilChr07G000433| 统一新 Gene ID | SmilChr07G000433 |
|---|---|
| 名称 | SmilChr07G000433 |
| 描述 | peroxidase 24-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 3028622 - 3030397 / - |
| NCBI Gene ID | LOC130991627 |
|---|---|
| GeneID | 130991627 |
| locus_tag | - |
| NCBI Name | LOC130991627 |
| 原始查询 | SmilChr07G000433 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | peroxidase 24-like |
| 产物 | peroxidase 24-like |
| Arabidopsis | AT2G39040 (AT2G39040)Peroxidase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818490] identity=59.5; qcov=0.907; evalue=1.33e-127; confidence=high |
| Rice | Os06g0681600 (prx89)- identity=52.8; qcov=0.916; evalue=7.48e-104; confidence=high |
| GO | GO:0004601 (peroxidase activity); GO:0006979 (response to oxidative stress); GO:0009505 (plant-type cell wall); GO:0009506 (plasmodesma); GO:0020037 (heme binding); GO:0042744 (hydrogen peroxide catabolic process) |
| KEGG | smil00940 (Phenylpropanoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00141 (peroxidase) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991627 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 1.00000 | XP_057771921.1 |
| 2 | Cell wall | 细胞壁 | 0.20000 | XP_057771921.1 |
| 3 | Vacuole | 液泡 | 0.20000 | XP_057771921.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057771921.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057771921.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:3028863 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B51,B82,C10,C14 |
Chr7:3028867 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B1,B27,B45,B49 |
Chr7:3028936 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A13,C12 |
Chr7:3028986 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B1,B27,B45,B49 |
Chr7:3029027 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A6,C4 |
Chr7:3029098 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A13,B114,B17,C56,D11 |
Chr7:3029100 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B73 |
Chr7:3029108 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B123,B134,B85 |
Chr7:3029157 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B68 |
Chr7:3029158 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B131,B64,B99,C87 |
Chr7:3029468 |
AG |
A |
1bp_deletion | frameshift_variant | 1 | C56 |
Chr7:3029468 |
AG |
A |
1bp_deletion | CDS_variant | 1 | C56 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057771921.1PF00141
peroxidase 54-298 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771921.1 |
Pfam | PF00141 |
peroxidase | Domain | 54 | 298 | 1.7e-78 | 264.4 | Peroxidase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。