Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G000455

染色体: Chr07 坐标: 3221278-3225546 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G000455
名称SmilChr07G000455
描述uncharacterized SmilChr07G000455
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向3221278 - 3225546 / +

ID 对照

NCBI Gene IDLOC130991652
GeneID130991652
locus_tag-
NCBI NameLOC130991652
原始查询SmilChr07G000455

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818494]; symbol=EMB2799; hit=AT2G39080; species=arabidopsis; confidence=high
产物NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818494]; symbol=EMB2799; hit=AT2G39080; species=arabidopsis; confidence=high
ArabidopsisAT2G39080 (EMB2799)
NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818494]
identity=67.7; qcov=0.965; evalue=1.53e-151; confidence=high
RiceOs01g0367100 (PHD1)
-
identity=70.6; qcov=0.834; evalue=6.66e-145; confidence=high
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:130991652

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Chloroplast 叶绿体 1.00000 XP_057771963.1
2 Endoplasmic reticulum 内质网 1.00000 XP_057771965.1
3 Chloroplast stroma 叶绿体基质 1.00000 XP_057771963.1
4 Endoplasmic reticulum membrane 内质网膜 0.40000 XP_057771965.1
5 Golgi apparatus 高尔基体 0.20000 XP_057771965.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:3221514 C T EMS_canonical_SNV CDS_variant 3 C62,C78,C85
Chr7:3221535 C T EMS_canonical_SNV CDS_variant 2 A24,D2
Chr7:3221557 C T EMS_canonical_SNV CDS_variant 1 B117
Chr7:3221597 C T EMS_canonical_SNV CDS_variant 1 D11
Chr7:3222290 G A EMS_canonical_SNV CDS_variant 4 B119,B7,C79,D3
Chr7:3222294 T TC 1bp_insertion frameshift_variant 4 B119,B7,C79,D3
Chr7:3222294 T TC 1bp_insertion CDS_variant 4 B119,B7,C79,D3
Chr7:3222370 T TA 1bp_insertion frameshift_variant 5 B119,B127,B7,C79,D3
Chr7:3222370 T TA 1bp_insertion CDS_variant 5 B119,B127,B7,C79,D3
Chr7:3222546 C T EMS_canonical_SNV CDS_variant 1 D6
Chr7:3222569 G A EMS_canonical_SNV CDS_variant 1 B136
Chr7:3223068 C T EMS_canonical_SNV CDS_variant 5 B119,B127,B7,C79,D3

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA
XR_009091176.1
GAGATGGGCGAGATAGGTAGATCGCTATCAAATGCAACAATTTTGGCTAACAGCTCAAGTGACCACATGTCAAAATCCTAGTGGATAAGAGGATTCCGGCCTCTACAGTTGGAGCGCCTCCGATATTAATCCGAGTTAATGAATTGATTGAAATCCGAGCCCTTGTTTCTCCCTCATTAATCATATCGATTATTTGAGACAAAAAACAGAAAAAACTCGAAAATGAGTAGCCTAACCAACTTACGTCTCACCAACTGCAA...
XR_009091177.1
AACTCGAAAATGAGTAGCCTAACCAACTTACGTCTCACCAACTGCAATGACTTCACCGTAAACGCTCATAGGCTCAACAACCTCAATTCCGCTTCTCTCTCTCCTTCCCTTTCGTTTCCCGCAAGCTTCAATTGCCGGACTCCTCTCACGACCTCGTTTTCCATGGACGCCGCGGTTTCTTCCAAAGTCAAGGCTTCATCCACCATCGGTACTGTCTGTGTGTGTGCGTGTGTGCGTGTGTCTAAATTGAGTGAAATTGT...

CDS

4 records

下载 CDS FASTA
LOC130991652
ATGAGTAGCCTAACCAACTTACGTCTCACCAACTGCAATGACTTCACCGTAAACGCTCATAGGCTCAACAACCTCAATTCCGCTTCTCTCTCTCCTTCCCTTTCGTTTCCCGCAAGCTTCAATTGCCGGACTCCTCTCACGACCTCGTTTTCCATGGACGCCGCGGTTTCTTCCAAAGTCAAGGCTTCATCCACCATCGGTGTGCCTAACAATGAACTGGAAGCTTCATCTGCTGGAGCAGTTGGTGCCAATGACTTGCT...
LOC130991652
ATGAGTAGCCTAACCAACTTACGTCTCACCAACTGCAATGACTTCACCGTAAACGCTCATAGGCTCAACAACCTCAATTCCGCTTCTCTCTCTCCTTCCCTTTCGTTTCCCGCAAGCTTCAATTGCCGGACTCCTCTCACGACCTCGTTTTCCATGGACGCCGCGGTTTCTTCCAAAGTCAAGGCTTCATCCACCATCGGTGTGCCTAACAATGAACTGGAAGCTTCATCTGCTGGAGCAGTTGGTGCCAATGACTTGCT...

Protein

4 records

下载 Protein FASTA
XP_057771963.1
MSSLTNLRLTNCNDFTVNAHRLNNLNSASLSPSLSFPASFNCRTPLTTSFSMDAAVSSKVKASSTIGVPNNELEASSAGAVGANDLLIVGPGVLGRIIAEKWREEHPGSQIYGQTLTSNHHEELIKMGITPSLKETKVAHKFPYVIFCAPPSRNLDYPGEVREATLNWNGEGCFLFTSSSAPYDCNDNGYCDEDTPVVPIGRSPRTDNLLKSEKVVLEAGGCVVRLAGLYKADRGAHTYWLEKGTLEVRPDHILNLIHYE...
XP_057771964.1
MSSLTNLRLTNCNDFTVNAHRLNNLNSASLSPSLSFPASFNCRTPLTTSFSMDAAVSSKVKASSTIGVPNNELEASSAGAVGANDLLIVGPGVLGRIIAEKWREEHPGSQIYGQTLTSNHHEELIKMGITPSLKETKVAHKFPYVIFCAPPSRNLDYPGEVREATLNWNGEGCFLFTSSSAPYDCNDNGYCDEDTPVVPIGRSPRTDNLLKSEKVVLEAGGCVVRLAGLYKADRGAHTYWLEKGTLEVRPDHILNLIHYE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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