Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000456`

染色体: Chr07 坐标: 3226480-3233069 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000456`
名称	SmilChr07G000456
描述	probable serine/threonine-protein kinase At1g54610
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	3226480 - 3233069 / `+`

ID 对照

NCBI Gene ID	`LOC130991649`
GeneID	`130991649`
locus_tag	`-`
NCBI Name	`LOC130991649`
原始查询	`SmilChr07G000456`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable serine/threonine-protein kinase At1g54610
产物	probable serine/threonine-protein kinase At1g54610
Arabidopsis	`AT1G54610` (AT1G54610) Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:841903] identity=72.8; qcov=0.873; evalue=0; confidence=high
Rice	`Os01g0367700` (Orysa) - identity=76; qcov=0.833; evalue=0; confidence=high
GO	GO:0000307 (cyclin-dependent protein kinase holoenzyme complex); GO:0004693 (cyclin-dependent protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0006468 (protein phosphorylation); GO:0008353 (RNA polymerase II CTD heptapeptide repeat kinase activity); GO:0032968 (positive regulation of transcription elongation by RNA polymerase II)
KEGG	-
Pfam	PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr)
InterPro	-
eggNOG	-
NR	GeneID:130991649

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.80000	`XP_057771957.1`
2	Cell membrane	细胞膜	0.40000	`XP_057771957.1`
3	Nucleus	细胞核	0.20000	`XP_057771957.1`
4	Cytoplasm	细胞质	0.20000	`XP_057771957.1`
5	Chromosome	染色体	0.00000	`XP_057771957.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:3227670`	`TG`	`T`	1bp_deletion	frameshift_variant	1	C50
`Chr7:3227670`	`TG`	`T`	1bp_deletion	CDS_variant	1	C50
`Chr7:3227718`	`AAG`	`A`	2bp_deletion	frameshift_variant	1	B47
`Chr7:3227718`	`AAG`	`A`	2bp_deletion	CDS_variant	1	B47
`Chr7:3227818`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A20,A3,B36,C38
`Chr7:3228202`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C70
`Chr7:3228376`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A23,B73,C40,C52,D8
`Chr7:3228549`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B4,D10
`Chr7:3229032`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B4,C46,D10,D9
`Chr7:3229739`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A14,B44,C15
`Chr7:3230668`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B34,B62,B65,B77,B80
`Chr7:3230717`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057771957.1

576 aa

288

576

Pkinase

PK_Tyr_Ser-Thr

PF00069 Pkinase 132-416 aa PF07714 PK_Tyr_Ser-Thr 135-340 aa

XP_057771958.1

576 aa

288

576

Pkinase

PK_Tyr_Ser-Thr

PF00069 Pkinase 132-416 aa PF07714 PK_Tyr_Ser-Thr 135-340 aa

XP_057771960.1

576 aa

288

576

Pkinase

PK_Tyr_Ser-Thr

PF00069 Pkinase 132-416 aa PF07714 PK_Tyr_Ser-Thr 135-340 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057771957.1`	Pfam	`PF00069`	Pkinase	Domain	132	416	1.8e-64	218.4	Protein kinase domain
`XP_057771957.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	135	340	2.9e-29	102.9	Protein tyrosine and serine/threonine kinase
`XP_057771958.1`	Pfam	`PF00069`	Pkinase	Domain	132	416	1.8e-64	218.4	Protein kinase domain
`XP_057771958.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	135	340	2.9e-29	102.9	Protein tyrosine and serine/threonine kinase
`XP_057771960.1`	Pfam	`PF00069`	Pkinase	Domain	132	416	1.8e-64	218.4	Protein kinase domain
`XP_057771960.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	135	340	2.9e-29	102.9	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057915974.1
AATATTTAAAAGATTATGTAATAGTACGCTCAAACTTGAGTCATTTAATCTAAAAAATTAATACACACAAAAATGAATATTTTTCATTTTTAACATGTTCATTTAAAAAAAACGGTATAAAAATAATTCCACTCTTATATAAACTTCCAAATGTTTTAATCCTTATACTACGACGCTTGAAGATTAATTACTCAAGCCAATGATACATTTAAAATAGAGATGTTAAAAACAAGTCAGAATTATTTTTAAATCAGTTTGAG...

XM_057915975.1
AATATTTAAAAGATTATGTAATAGTACGCTCAAACTTGAGTCATTTAATCTAAAAAATTAATACACACAAAAATGAATATTTTTCATTTTTAACATGTTCATTTAAAAAAAACGGTATAAAAATAATTCCACTCTTATATAAACTTCCAAATGTTTTAATCCTTATACTACGACGCTTGAAGATTAATTACTCAAGCCAATGATACATTTAAAATAGAGATGTTAAAAACAAGTCAGAATTATTTTTAAATCAGTTTGAG...

CDS

3 records

下载 CDS FASTA

LOC130991649
ATGGGGTGTGCTTTTGGGAAAGAAATTTCGGAGTCTGGTTCACCTGGTGGGAATGCTGTAGTAGAGAGGAGGAGAGAGAAGGGAAGAGAGAGAGAGTTGTCAGTGTCAGCTGAGAGTGGGGAGAAAGTAGTAGAGAGTTCAGTGAGTAAGGCAAAGGGTGGTGGTGATGGTGATGGTGATGAAGTTCAGAATGGTGGGGTTAAGAAGGAGGATTTGAAAGATGGGATTGTGAGGCAATCGAGGAACGAAAAGAGGAGGTC...

Protein

3 records

下载 Protein FASTA

XP_057771957.1
MGCAFGKEISESGSPGGNAVVERRREKGRERELSVSAESGEKVVESSVSKAKGGGDGDGDEVQNGGVKKEDLKDGIVRQSRNEKRRSRSNPRLSNPPKNVHGEQVAAGWPSWLVAVAGEALSGWIPRRADTFEKLDKIGQGTYSNVYKARDALTGNIVALKKVRFDNLEPESIRFMAREILILRRLDHPNVIKLQGLVTSRMSCSLYLVFDYMPHDLAGLSSSPSIKFTEPQVKCFVHQLLSGLEHCHSRYVLHRDIKGS...

XP_057771958.1
MGCAFGKEISESGSPGGNAVVERRREKGRERELSVSAESGEKVVESSVSKAKGGGDGDGDEVQNGGVKKEDLKDGIVRQSRNEKRRSRSNPRLSNPPKNVHGEQVAAGWPSWLVAVAGEALSGWIPRRADTFEKLDKIGQGTYSNVYKARDALTGNIVALKKVRFDNLEPESIRFMAREILILRRLDHPNVIKLQGLVTSRMSCSLYLVFDYMPHDLAGLSSSPSIKFTEPQVKCFVHQLLSGLEHCHSRYVLHRDIKGS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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