当前解析结果
SmilChr07G000458| 统一新 Gene ID | SmilChr07G000458 |
|---|---|
| 名称 | SmilChr07G000458 |
| 描述 | divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 3235994 - 3237652 / + |
| NCBI Gene ID | LOC130991651 |
|---|---|
| GeneID | 130991651 |
| locus_tag | - |
| NCBI Name | LOC130991651 |
| 原始查询 | SmilChr07G000458 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | divinyl chlorophyllide a 8-vinyl-reductase, chloroplastic |
| 产物 | divinyl chlorophyllide a 8-vinyl-reductase%2C chloroplastic |
| Arabidopsis | AT5G18660 (PCB2)NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831984] identity=68.2; qcov=1.01; evalue=0; confidence=high |
| Rice | Os03g0351200 (OsDVR)- identity=67.2; qcov=0.82; evalue=3.29e-171; confidence=high |
| GO | GO:0016491 (oxidoreductase activity) |
| KEGG | smil00860 (Porphyrin metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01370 (Epimerase); PF05368 (NmrA); PF13460 (NAD_binding_10) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991651 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057771962.1 |
| 2 | Chloroplast thylakoid | 类囊体 | 1.00000 | XP_057771962.1 |
| 3 | Chloroplast stroma | 叶绿体基质 | 0.80000 | XP_057771962.1 |
| 4 | Chloroplast membrane | 叶绿体膜 | 0.40000 | XP_057771962.1 |
| 5 | Chloroplast thylakoid membrane | 类囊体膜 | 0.20000 | XP_057771962.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:3236353 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B122 |
Chr7:3236377 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr7:3236446 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B33,B53 |
Chr7:3236514 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B23,B75,C54,D6 |
Chr7:3236551 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C29,D11 |
Chr7:3236702 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B119,B127,B7,C79,D3 |
Chr7:3236774 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B71,B87 |
Chr7:3236819 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A11,B108 |
Chr7:3236895 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C65 |
Chr7:3237005 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B23,B75,C54 |
Chr7:3237037 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr7:3237080 |
AG |
A |
1bp_deletion | frameshift_variant | 1 | B27 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057771962.1PF05368
NmrA 85-384 aa
PF01370
Epimerase 86-207 aa
PF13460
NAD_binding_10 90-290 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771962.1 |
Pfam | PF05368 |
NmrA | Family | 85 | 384 | 2.6e-08 | 34.6 | NmrA-like family |
XP_057771962.1 |
Pfam | PF01370 |
Epimerase | Family | 86 | 207 | 6e-10 | 39.7 | NAD dependent epimerase/dehydratase family |
XP_057771962.1 |
Pfam | PF13460 |
NAD_binding_10 | Domain | 90 | 290 | 1.1e-14 | 55.5 | NAD(P)H-binding |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。