当前解析结果
SmilChr07G000467| 统一新 Gene ID | SmilChr07G000467 |
|---|---|
| 名称 | SmilChr07G000467 |
| 描述 | beta-D-glucosyl crocetin beta-1,6-glucosyltransferase-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 3280712 - 3283468 / + |
| NCBI Gene ID | LOC130991660 |
|---|---|
| GeneID | 130991660 |
| locus_tag | - |
| NCBI Name | LOC130991660 |
| 原始查询 | SmilChr07G000467 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | beta-D-glucosyl crocetin beta-1,6-glucosyltransferase-like |
| 产物 | beta-D-glucosyl crocetin beta-1%2C6-glucosyltransferase-like |
| Arabidopsis | AT5G49690 (AT5G49690)UDP-Glycosyltransferase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835032] identity=31.2; qcov=1; evalue=2.67e-58; confidence=low |
| Rice | Os07g0672700- identity=42.8; qcov=1.05; evalue=5.26e-115; confidence=medium |
| GO | GO:0008194 (UDP-glycosyltransferase activity) |
| KEGG | - |
| Pfam | PF00201 (UDPGT); PF06722 (EryCIII-like_C); PF26168 (Glyco_transf_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991660 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057771974.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057771974.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057771974.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057771974.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057771974.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:3280836 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C60,D11 |
Chr7:3280953 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B1,B110,C39 |
Chr7:3280965 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A14,C78,D2 |
Chr7:3280983 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B125,C15 |
Chr7:3280999 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B74 |
Chr7:3281004 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B69 |
Chr7:3281010 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C39 |
Chr7:3281016 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A23,B138 |
Chr7:3281017 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr7:3281019 |
G |
GTT |
2bp_insertion | frameshift_variant | 26 | A1,A8,B104,B105,B108,B110,B113,B114,B129,B27,B34,B53,B6,B72,C16,C41,C50,C53,C63,C67,C73,C75,C87,C9,D1,D7 |
Chr7:3281020 |
GAC |
G |
2bp_deletion | frameshift_variant | 26 | A1,A8,B104,B105,B108,B110,B113,B114,B129,B27,B34,B53,B6,B72,C16,C41,C50,C53,C63,C67,C73,C75,C87,C9,D1,D7 |
Chr7:3281038 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057771974.1PF26168
Glyco_transf_N 7-226 aa
PF00201
UDPGT 252-400 aa
PF06722
EryCIII-like_C 319-419 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771974.1 |
Pfam | PF26168 |
Glyco_transf_N | Domain | 7 | 226 | 1e-10 | 42.7 | Glycosyltransferase, N-terminal domain |
XP_057771974.1 |
Pfam | PF00201 |
UDPGT | Family | 252 | 400 | 8.6e-15 | 55.2 | UDP-glucoronosyl and UDP-glucosyl transferase |
XP_057771974.1 |
Pfam | PF06722 |
EryCIII-like_C | Domain | 319 | 419 | 3e-08 | 34.5 | Erythromycin biosynthesis protein CIII-like, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。