当前解析结果
SmilChr07G000470| 统一新 Gene ID | SmilChr07G000470 |
|---|---|
| 名称 | SmilChr07G000470 |
| 描述 | UDP-glucosyltransferase 29-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 3292060 - 3293664 / + |
| NCBI Gene ID | LOC130991663 |
|---|---|
| GeneID | 130991663 |
| locus_tag | - |
| NCBI Name | LOC130991663 |
| 原始查询 | SmilChr07G000470 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | UDP-glucosyltransferase 29-like |
| 产物 | UDP-glucosyltransferase 29-like |
| Arabidopsis | AT5G65550 (AT5G65550)UDP-Glycosyltransferase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:836681] identity=31.4; qcov=1.01; evalue=1.91e-69; confidence=low |
| Rice | Os07g0672700- identity=37.9; qcov=1.05; evalue=8.88e-104; confidence=medium |
| GO | GO:0008194 (UDP-glycosyltransferase activity) |
| KEGG | - |
| Pfam | PF00201 (UDPGT); PF04101 (Glyco_tran_28_C); PF26168 (Glyco_transf_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991663 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057771977.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057771977.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057771977.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057771977.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057771977.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:3292181 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B28,B80 |
Chr7:3292229 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B1,B27,B45 |
Chr7:3292278 |
GA |
G |
1bp_deletion | frameshift_variant | 6 | A23,B47,B69,C49,C5,C50 |
Chr7:3292307 |
A |
AT |
1bp_insertion | frameshift_variant | 3 | A23,C49,C87 |
Chr7:3292307 |
A |
AT |
1bp_insertion | CDS_variant | 3 | A23,C49,C87 |
Chr7:3292315 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A23,C49,C87 |
Chr7:3292332 |
AGG |
A |
2bp_deletion | frameshift_variant | 2 | B115,B61 |
Chr7:3292332 |
AGG |
A |
2bp_deletion | CDS_variant | 2 | B115,B61 |
Chr7:3292335 |
C |
CAG |
2bp_insertion | frameshift_variant | 2 | B115,B61 |
Chr7:3292335 |
C |
CAG |
2bp_insertion | CDS_variant | 2 | B115,B61 |
Chr7:3292354 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C47 |
Chr7:3292373 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B47,C49,C5,C50,C87 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057771977.1PF26168
Glyco_transf_N 7-239 aa
PF00201
UDPGT 241-413 aa
PF04101
Glyco_tran_28_C 346-413 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771977.1 |
Pfam | PF26168 |
Glyco_transf_N | Domain | 7 | 239 | 3.9e-07 | 30.9 | Glycosyltransferase, N-terminal domain |
XP_057771977.1 |
Pfam | PF00201 |
UDPGT | Family | 241 | 413 | 8.2e-22 | 78.4 | UDP-glucoronosyl and UDP-glucosyl transferase |
XP_057771977.1 |
Pfam | PF04101 |
Glyco_tran_28_C | Domain | 346 | 413 | 1.4e-05 | 25.9 | Glycosyltransferase family 28 C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。