当前解析结果
SmilChr07G000472| 统一新 Gene ID | SmilChr07G000472 |
|---|---|
| 名称 | SmilChr07G000472 |
| 描述 | E3 ubiquitin-protein ligase MIEL1 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 3303203 - 3306190 / - |
| NCBI Gene ID | LOC130991665 |
|---|---|
| GeneID | 130991665 |
| locus_tag | - |
| NCBI Name | LOC130991665 |
| 原始查询 | SmilChr07G000472 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | E3 ubiquitin-protein ligase MIEL1 |
| 产物 | E3 ubiquitin-protein ligase MIEL1 |
| Arabidopsis | AT5G18650 (AT5G18650)CHY-type/CTCHY-type/RING-type Zinc finger protein [Source:NCBI gene (formerly Entrezgene);Acc:831983] identity=81.7; qcov=0.993; evalue=9.8e-171; confidence=high |
| Rice | Os12g0538500- identity=65.2; qcov=0.941; evalue=3.94e-126; confidence=high |
| GO | GO:0005634 (nucleus); GO:0006511 (ubiquitin-dependent protein catabolic process); GO:0008270 (zinc ion binding); GO:0016567 (protein ubiquitination); GO:0061630 (ubiquitin protein ligase activity) |
| KEGG | smil04120 (Ubiquitin mediated proteolysis - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00097 (zf-C3HC4); PF05495 (zf-CHY); PF13445 (zf-RING_UBOX); PF13639 (zf-RING_2); PF14599 (zinc_ribbon_6) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991665 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057771979.1 |
| 2 | Cytoplasm | 细胞质 | 1.00000 | XP_057771979.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057771979.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057771979.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057771979.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:3303473 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C1 |
Chr7:3303533 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A6,C4 |
Chr7:3303535 |
ACT |
A |
2bp_deletion | frameshift_variant | 1 | C63 |
Chr7:3303535 |
ACT |
A |
2bp_deletion | CDS_variant | 1 | C63 |
Chr7:3303548 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B113,B25,B70,C16 |
Chr7:3303646 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B55 |
Chr7:3303703 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A2,B118,C32,C68,C7 |
Chr7:3304002 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr7:3304062 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B136,C86,D11 |
Chr7:3304410 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A11,B108,B136,B68 |
Chr7:3305813 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A4 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057771979.1PF05495
zf-CHY 20-93 aa
PF13639
zf-RING_2 154-197 aa
PF13445
zf-RING_UBOX 155-195 aa
PF00097
zf-C3HC4 155-197 aa
PF14599
zinc_ribbon_6 202-260 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771979.1 |
Pfam | PF05495 |
zf-CHY | Domain | 20 | 93 | 9.5e-19 | 68.3 | CHY zinc finger |
XP_057771979.1 |
Pfam | PF13639 |
zf-RING_2 | Domain | 154 | 197 | 2.2e-07 | 31.7 | Ring finger domain |
XP_057771979.1 |
Pfam | PF13445 |
zf-RING_UBOX | Domain | 155 | 195 | 3.9e-06 | 27.5 | RING-type zinc-finger |
XP_057771979.1 |
Pfam | PF00097 |
zf-C3HC4 | Domain | 155 | 197 | 3.9e-06 | 27.3 | Zinc finger, C3HC4 type (RING finger) |
XP_057771979.1 |
Pfam | PF14599 |
zinc_ribbon_6 | Domain | 202 | 260 | 7.3e-27 | 93.8 | Zinc-ribbon |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。