当前解析结果
SmilChr07G000481| 统一新 Gene ID | SmilChr07G000481 |
|---|---|
| 名称 | SmilChr07G000481 |
| 描述 | uncharacterized SmilChr07G000481 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 3357419 - 3363559 / + |
| NCBI Gene ID | LOC130991673 |
|---|---|
| GeneID | 130991673 |
| locus_tag | - |
| NCBI Name | LOC130991673 |
| 原始查询 | SmilChr07G000481 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Galactose oxidase/kelch repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831977]; symbol=AT5G18590; hit=AT5G18590; species=arabidopsis; confidence=high |
| 产物 | Galactose oxidase/kelch repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831977]; symbol=AT5G18590; hit=AT5G18590; species=arabidopsis; confidence=high |
| Arabidopsis | AT5G18590 (AT5G18590)Galactose oxidase/kelch repeat superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831977] identity=62.4; qcov=1.02; evalue=0; confidence=high |
| Rice | Os12g0538800- identity=48.5; qcov=1.01; evalue=0; confidence=high |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF01344 (Kelch_1); PF24681 (Kelch_KLHDC2_KLHL20_DRC7); PF24981 (Beta-prop_ATRN-LZTR1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991673 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.80000 | XP_057771991.1 |
| 2 | Cell membrane | 细胞膜 | 0.20000 | XP_057771991.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057771991.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057771991.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057771991.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:3357696 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B101,C33 |
Chr7:3358567 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B44 |
Chr7:3359084 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B81 |
Chr7:3360758 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B38,B39 |
Chr7:3361149 |
G |
A |
EMS_canonical_SNV | stop_gained | 25 | A1,A10,A13,A25,B11,B139,B31,B35,B42,B43,B48,B5,B61,B64,B65,C3,C31,C34,C35,C37,C40,C43,C45,C47,C63 |
Chr7:3361628 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B117 |
Chr7:3361702 |
C |
T |
EMS_canonical_SNV | stop_gained | 7 | B11,B35,B42,B43,B61,C37,C40 |
Chr7:3361987 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B125,C11,C60,C69 |
Chr7:3362050 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr7:3362659 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
Chr7:3362748 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B101,C33 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057771991.1PF01344
Kelch_1 87-130 aa
PF24681
Kelch_KLHDC2_KLHL20_DRC7 148-371 aa
PF24981
Beta-prop_ATRN-LZTR1 210-380 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771991.1 |
Pfam | PF01344 |
Kelch_1 | Repeat | 87 | 130 | 4.9e-25 | 87.4 | Kelch motif |
XP_057771991.1 |
Pfam | PF24681 |
Kelch_KLHDC2_KLHL20_DRC7 | Repeat | 148 | 371 | 2.3e-70 | 237.0 | KLHDC2/KLHL20/DRC7 Kelch-repeats domain |
XP_057771991.1 |
Pfam | PF24981 |
Beta-prop_ATRN-LZTR1 | Repeat | 210 | 380 | 4e-34 | 118.9 | Attractin/LZTR1 beta-propeller |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。