Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000482`

染色体: Chr07 坐标: 3364006-3365866 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000482`
名称	SmilChr07G000482
描述	uncharacterized SmilChr07G000482
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	3364006 - 3365866 / `-`

ID 对照

NCBI Gene ID	`LOC130991674`
GeneID	`130991674`
locus_tag	`-`
NCBI Name	`LOC130991674`
原始查询	`SmilChr07G000482`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820545]; symbol=AT3G13440; hit=AT3G13440; species=arabidopsis; confidence=high
产物	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820545]; symbol=AT3G13440; hit=AT3G13440; species=arabidopsis; confidence=high
Arabidopsis	`AT3G13440` (AT3G13440) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820545] identity=72.2; qcov=0.847; evalue=4.25e-112; confidence=high
Rice	`Os03g0824200` (OSJNBb0081B07.5) - identity=62.6; qcov=0.839; evalue=1.02e-86; confidence=high
GO	GO:0003676 (nucleic acid binding); GO:0008276 (protein methyltransferase activity); GO:0008757 (S-adenosylmethionine-dependent methyltransferase activity); GO:0032259 (methylation); GO:0035657 (eRF1 methyltransferase complex)
KEGG	-
Pfam	PF05175 (MTS)
InterPro	-
eggNOG	-
NR	GeneID:130991674

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057771992.1`
2	Cytosol	细胞质基质	0.80000	`XP_057771992.1`
3	Nucleus	细胞核	0.60000	`XP_057771992.1`
4	Chromosome	染色体	0.00000	`XP_057771992.1`
5	Centromere	着丝粒	0.00000	`XP_057771992.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:3364550`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B125
`Chr7:3364615`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B110,B2,B20,C8
`Chr7:3364645`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A11,A18,B68
`Chr7:3364744`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C80
`Chr7:3364757`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B14
`Chr7:3364781`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	A1
`Chr7:3364781`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A1
`Chr7:3364835`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C1
`Chr7:3365120`	`T`	`TA`	1bp_insertion	frameshift_variant	1	C8
`Chr7:3365120`	`T`	`TA`	1bp_insertion	CDS_variant	1	C8
`Chr7:3365164`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B36,C10,C14,C65
`Chr7:3365165`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B11,C55,C71

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057771992.1

255 aa

128

255

MTS

PF05175 MTS 47-172 aa

XP_057771993.1

255 aa

128

255

MTS

PF05175 MTS 47-172 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057771992.1`	Pfam	`PF05175`	MTS	Domain	47	172	3.1e-11	43.9	Methyltransferase small domain
`XP_057771993.1`	Pfam	`PF05175`	MTS	Domain	47	172	3.1e-11	43.9	Methyltransferase small domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057916009.1
AACAATATGTTTTTGAAATTACTACTTAACTTTGCTCATGATTTAATTTTTTTTTTATTTTTTTTAGGAAACTTTGCTCATGAATTGGACACTAGTAATTAAGCATCTTCCTAAATTACCAATAATTAAAATACATTTGGGAAATTAAGCCTCCTCCAAATCTGCCTAGGCTCTCGTCTAAAACAACTTTTTTGAATTTGCAATCCAAAATCAGCAAAGTATCACAAATTACAAGCCCTAGCCCCCAAATCCCACAATCC...

XM_057916010.1
AGGAAACTTTGCTCATGAATTGGACACTAGTAATTAAGCATCTTCCTAAATTACCAATAATTAAAATACATTTGGGAAATTAAGCCTCCTCCAAATCTGCCTAGGCTCTCGTCTAAAACAACTTTTTTGAATTTGCAATCCAAAATCAGCAAAGTATCACAAATTACAAGCCCTAGCCCCCAAATCCCACAATCCAAAGTGGCGGCACAATTCGTTGACCTCGCCGGAGCAACGGCAGCCCATCGGCGCATCTCATCGTC...

CDS

2 records

下载 CDS FASTA

LOC130991674
ATGCACTCCAACATTGCTCGAATTAAGCTTGTGAGCTCACACCCTGAAGTTTATGATCCGTGTGATGATTCATTTGCATTGGTTGATGCATTGCTAGCCGATAGAGCTAATCTAATAGGCCATCGCCCGTCGATTTGCATGGAAATTGGCTGTGGCAGTGGCTATGTCATTACTTCACTTGCTCTCTTGCTCGGGAAAGAGTGCCCTAGTTCATACTACATTGCAACAGACATAAATCCCCACGCCATCACAGCGACGCA...

Protein

2 records

下载 Protein FASTA

XP_057771992.1
MHSNIARIKLVSSHPEVYDPCDDSFALVDALLADRANLIGHRPSICMEIGCGSGYVITSLALLLGKECPSSYYIATDINPHAITATHETLEAHGCRAEVVNTDIASGLERRLARCVDVMVVNPPYVPTPDAEVGCRGIASAWAGGENGRRVIDRMLPVADNLLSDKGWLYMVTLAANNPMELCLQMRKKGYASRIVLQRSTEEESLNIIKFWRDKDTLLEVNECTEFEKTGNGIRVKLPHFSPFSFWNYGYRATN

XP_057771993.1
MHSNIARIKLVSSHPEVYDPCDDSFALVDALLADRANLIGHRPSICMEIGCGSGYVITSLALLLGKECPSSYYIATDINPHAITATHETLEAHGCRAEVVNTDIASGLERRLARCVDVMVVNPPYVPTPDAEVGCRGIASAWAGGENGRRVIDRMLPVADNLLSDKGWLYMVTLAANNPMELCLQMRKKGYASRIVLQRSTEEESLNIIKFWRDKDTLLEVNECTEFEKTGNGIRVKLPHFSPFSFWNYGYRATN

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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