当前解析结果
SmilChr07G000483| 统一新 Gene ID | SmilChr07G000483 |
|---|---|
| 名称 | SmilChr07G000483 |
| 描述 | GTP-binding protein OBGC, chloroplastic |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 3375059 - 3378902 / + |
| NCBI Gene ID | LOC130991676 |
|---|---|
| GeneID | 130991676 |
| locus_tag | - |
| NCBI Name | LOC130991676 |
| 原始查询 | SmilChr07G000483 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | GTP-binding protein OBGC, chloroplastic |
| 产物 | GTP-binding protein OBGC%2C chloroplastic |
| Arabidopsis | AT5G18570 (EMB269)GTP1/OBG family protein [Source:NCBI gene (formerly Entrezgene);Acc:831975] identity=60.4; qcov=1.04; evalue=0; confidence=high |
| Rice | Os07g0669200 (OsObgC1)- identity=73.2; qcov=0.695; evalue=0; confidence=high |
| GO | GO:0000287 (magnesium ion binding); GO:0003924 (GTPase activity); GO:0005525 (GTP binding); GO:0005739 (mitochondrion) |
| KEGG | - |
| Pfam | PF01018 (GTP1_OBG); PF01926 (MMR_HSR1); PF02421 (FeoB_N); PF09269 (DUF1967) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991676 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057771995.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 1.00000 | XP_057771995.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057771995.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057771995.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057771995.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:3375293 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr7:3375339 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B108,C39 |
Chr7:3375498 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A21,B124,B44,C13,D5 |
Chr7:3375599 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B28,B80 |
Chr7:3375651 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B28,B65,B78,B80,D10 |
Chr7:3375669 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B14 |
Chr7:3375688 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | C51 |
Chr7:3375688 |
TG |
T |
1bp_deletion | CDS_variant | 1 | C51 |
Chr7:3375699 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A23,B138,B8,C20 |
Chr7:3375866 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B28,B80 |
Chr7:3375933 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B28,B80 |
Chr7:3375941 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B28,B80 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057771995.1PF01018
GTP1_OBG 207-359 aa
PF01926
MMR_HSR1 362-482 aa
PF02421
FeoB_N 363-519 aa
PF09269
DUF1967 562-631 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057771995.1 |
Pfam | PF01018 |
GTP1_OBG | Domain | 207 | 359 | 1.7e-55 | 187.6 | GTP1/OBG |
XP_057771995.1 |
Pfam | PF01926 |
MMR_HSR1 | Family | 362 | 482 | 5.5e-23 | 82.0 | 50S ribosome-binding GTPase |
XP_057771995.1 |
Pfam | PF02421 |
FeoB_N | Domain | 363 | 519 | 1.9e-08 | 34.7 | Ferrous iron transport protein B |
XP_057771995.1 |
Pfam | PF09269 |
DUF1967 | Domain | 562 | 631 | 8.1e-21 | 74.6 | Domain of unknown function (DUF1967) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。