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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G000485

染色体: Chr07 坐标: 3391334-3396495 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G000485
名称SmilChr07G000485
描述zinc finger CCCH domain-containing protein 34
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向3391334 - 3396495 / -

ID 对照

NCBI Gene IDLOC130991677
GeneID130991677
locus_tag-
NCBI NameLOC130991677
原始查询SmilChr07G000485

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述zinc finger CCCH domain-containing protein 34
产物zinc finger CCCH domain-containing protein 34
ArabidopsisAT2G47850 (AT2G47850)
Zinc finger C-x8-C-x5-C-x3-H type family protein [Source:NCBI gene (formerly Entrezgene);Acc:819397]
identity=55.4; qcov=0.927; evalue=4.46e-159; confidence=high
RiceOs01g0258700 (OsC3H6)
-
identity=53.3; qcov=0.948; evalue=8.77e-158; confidence=high
GOGO:0003729 (mRNA binding); GO:0046872 (metal ion binding)
KEGG-
PfamPF00642 (zf-CCCH); PF14608 (zf-CCCH_2)
InterPro-
eggNOG-
NRGeneID:130991677

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057771996.1
2 Cytoplasm 细胞质 0.40000 XP_057771997.1
3 Chromosome 染色体 0.00000 XP_057771996.1
4 Centromere 着丝粒 0.00000 XP_057771996.1
5 Chromatin 染色质 0.00000 XP_057771996.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:3392043 G A EMS_canonical_SNV CDS_variant 2 B128,B136
Chr7:3393185 C T EMS_canonical_SNV CDS_variant 2 B28,B80
Chr7:3393335 G A EMS_canonical_SNV CDS_variant 1 C2
Chr7:3393482 G A EMS_canonical_SNV CDS_variant 2 B128,B136
Chr7:3393777 G A EMS_canonical_SNV CDS_variant 2 C33,C46
Chr7:3394114 C T EMS_canonical_SNV CDS_variant 1 C6
Chr7:3396087 GC G 1bp_deletion frameshift_variant 21 A1,A10,A13,A25,A6,B11,B139,B31,B35,B42,B43,B5,B61,B64,C3,C31,C34,C35,C40,C43,C45

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057771996.1
496 aa
N
1
248
496
zf-CCCH
zf-CCCH_2
zf-CCCH
zf-CCCH_2
zf-CCCH
zf-CCCH_2
zf-CCCH
zf-CCCH_2
zf-CCCH
zf-CCCH_2
C
PF00642 zf-CCCH 48-73 aa PF14608 zf-CCCH_2 51-72 aa PF00642 zf-CCCH 110-134 aa PF14608 zf-CCCH_2 112-133 aa PF00642 zf-CCCH 156-180 aa PF14608 zf-CCCH_2 159-179 aa PF00642 zf-CCCH 323-349 aa PF14608 zf-CCCH_2 328-348 aa PF00642 zf-CCCH 370-395 aa PF14608 zf-CCCH_2 373-394 aa
XP_057771997.1
481 aa
N
1
240
481
zf-CCCH
zf-CCCH_2
zf-CCCH
zf-CCCH_2
zf-CCCH
zf-CCCH_2
zf-CCCH
zf-CCCH_2
zf-CCCH
zf-CCCH_2
C
PF00642 zf-CCCH 48-73 aa PF14608 zf-CCCH_2 51-72 aa PF00642 zf-CCCH 95-119 aa PF14608 zf-CCCH_2 97-118 aa PF00642 zf-CCCH 141-165 aa PF14608 zf-CCCH_2 144-164 aa PF00642 zf-CCCH 308-334 aa PF14608 zf-CCCH_2 313-333 aa PF00642 zf-CCCH 355-380 aa PF14608 zf-CCCH_2 358-379 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057771996.1 Pfam PF00642 zf-CCCH Family 48 73 2.3e-44 149.2 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
XP_057771996.1 Pfam PF14608 zf-CCCH_2 Domain 51 72 3.2e-18 66.2 RNA-binding, Nab2-type zinc finger
XP_057771996.1 Pfam PF00642 zf-CCCH Family 110 134 2.3e-44 149.2 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
XP_057771996.1 Pfam PF14608 zf-CCCH_2 Domain 112 133 3.2e-18 66.2 RNA-binding, Nab2-type zinc finger
XP_057771996.1 Pfam PF00642 zf-CCCH Family 156 180 2.3e-44 149.2 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
XP_057771996.1 Pfam PF14608 zf-CCCH_2 Domain 159 179 3.2e-18 66.2 RNA-binding, Nab2-type zinc finger
XP_057771996.1 Pfam PF00642 zf-CCCH Family 323 349 2.3e-44 149.2 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
XP_057771996.1 Pfam PF14608 zf-CCCH_2 Domain 328 348 3.2e-18 66.2 RNA-binding, Nab2-type zinc finger
XP_057771996.1 Pfam PF00642 zf-CCCH Family 370 395 2.3e-44 149.2 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
XP_057771996.1 Pfam PF14608 zf-CCCH_2 Domain 373 394 3.2e-18 66.2 RNA-binding, Nab2-type zinc finger
XP_057771997.1 Pfam PF00642 zf-CCCH Family 48 73 2e-44 149.4 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
XP_057771997.1 Pfam PF14608 zf-CCCH_2 Domain 51 72 2.8e-18 66.3 RNA-binding, Nab2-type zinc finger
XP_057771997.1 Pfam PF00642 zf-CCCH Family 95 119 2e-44 149.4 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
XP_057771997.1 Pfam PF14608 zf-CCCH_2 Domain 97 118 2.8e-18 66.3 RNA-binding, Nab2-type zinc finger
XP_057771997.1 Pfam PF00642 zf-CCCH Family 141 165 2e-44 149.4 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
XP_057771997.1 Pfam PF14608 zf-CCCH_2 Domain 144 164 2.8e-18 66.3 RNA-binding, Nab2-type zinc finger
XP_057771997.1 Pfam PF00642 zf-CCCH Family 308 334 2e-44 149.4 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
XP_057771997.1 Pfam PF14608 zf-CCCH_2 Domain 313 333 2.8e-18 66.3 RNA-binding, Nab2-type zinc finger
XP_057771997.1 Pfam PF00642 zf-CCCH Family 355 380 2e-44 149.4 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
XP_057771997.1 Pfam PF14608 zf-CCCH_2 Domain 358 379 2.8e-18 66.3 RNA-binding, Nab2-type zinc finger

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057916014.1
AATCTCAGAGACACACACTGAGTGTGAAATATATAAAAGGAGTGTGTTAAAATGACCACTAAACATACGTCTCTCTCTCTCTCTCTCTCTTCTTCCCTCCTTTCTCTCTCTCAAACCACCAAACCCCCTCTCTCGATCAAACCACCCTTCTCTCTCTCCCTCCCTCACTCACACACAATCACATGCTGCTGTGTGATTCTGTACCTACAACGTATAAAATACCTCTGTAAATATCTATCTCCGCACACTGTTATGAAATA...
XM_057916013.1
ATACGTCTCTCTCTCTCTCTCTCTCTTCTTCCCTCCTTTCTCTCTCTCAAACCACCAAACCCCCTCTCTCGATCAAACCACCCTTCTCTCTCTCCCTCCCTCACTCACACACAATCACATGCTGCTGTGTGATTCTGTACCTACAACGTATAAAATACCTCTGTAAATATCTATCTCCGCACACTGTTATGAAATACTTCCGTTGTATAGTGTAGATACTGTATATTTATAGAGAGAGAGAGAGTGTGCGTGTGTGTGTG...

CDS

2 records

下载 CDS FASTA
LOC130991677
ATGGAGAGATATAGCGGGATCCAGGCAATGGAGGCGGATCCGGTGGCGGAATGGGCGGCGCCGGGCGGAGAAACCGGGCTTGAAGAGCCTATGTGGCAATTGGGCCTTGGTGGAGGGCCCGAAGCGTACCCAGAGAGGCCCGATGAGCCCGATTGTATCTATTACTTAAGGACTGGTTTCTGTGGATACGGCAATCGCTGCCGGTTCAATCATCCCCGGGATCGTGGCACGGCAATGGGAGCTCTTAGAGCTGGTGGAGG...
LOC130991677
ATGGAGAGATATAGCGGGATCCAGGCAATGGAGGCGGATCCGGTGGCGGAATGGGCGGCGCCGGGCGGAGAAACCGGGCTTGAAGAGCCTATGTGGCAATTGGGCCTTGGTGGAGGGCCCGAAGCGTACCCAGAGAGGCCCGATGAGCCCGATTGTATCTATTACTTAAGGACTGGTTTCTGTGGATACGGCAATCGCTGCCGGTTCAATCATCCCCGGGATCGTGGCACGGTAAAATACGTTGATTTTGCAAGCTGTGG...

Protein

2 records

下载 Protein FASTA
XP_057771996.1
MERYSGIQAMEADPVAEWAAPGGETGLEEPMWQLGLGGGPEAYPERPDEPDCIYYLRTGFCGYGNRCRFNHPRDRGTVKYVDFASCGGYDHLAMGALRAGGGEYPERVGQPICQYYIRTGMCKFGGSCKYHHPKQGVGSSAPVALNFYGYPLRLGEKECSYYVKTGQCKFGVTCKFHHPQPAGIPMPPPGPGSLSASAAVPTPAMYPTGPSPSVQSSQQYGVIQGNWPVARPAMLQGSYVPGSYGHVILPPGVVPVPGWT...
XP_057771997.1
MERYSGIQAMEADPVAEWAAPGGETGLEEPMWQLGLGGGPEAYPERPDEPDCIYYLRTGFCGYGNRCRFNHPRDRGTAMGALRAGGGEYPERVGQPICQYYIRTGMCKFGGSCKYHHPKQGVGSSAPVALNFYGYPLRLGEKECSYYVKTGQCKFGVTCKFHHPQPAGIPMPPPGPGSLSASAAVPTPAMYPTGPSPSVQSSQQYGVIQGNWPVARPAMLQGSYVPGSYGHVILPPGVVPVPGWTPYAAPVSHAASPSNQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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