Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G000495

染色体: Chr07 坐标: 3446894-3449094 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G000495
名称SmilChr07G000495
描述uncharacterized SmilChr07G000495
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向3446894 - 3449094 / -

ID 对照

NCBI Gene IDLOC130991685
GeneID130991685
locus_tag-
NCBI NameLOC130991685
原始查询SmilChr07G000495

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述E3 ubiquitin-protein ligase [Source:NCBI gene (formerly Entrezgene);Acc:831972]; symbol=AT5G18540; hit=AT5G18540; species=arabidopsis; confidence=medium
产物E3 ubiquitin-protein ligase [Source:NCBI gene (formerly Entrezgene);Acc:831972]; symbol=AT5G18540; hit=AT5G18540; species=arabidopsis; confidence=medium
ArabidopsisAT5G18540 (AT5G18540)
E3 ubiquitin-protein ligase [Source:NCBI gene (formerly Entrezgene);Acc:831972]
identity=73.1; qcov=0.712; evalue=1.74e-41; confidence=medium
RiceOs07g0669600 (P0625E02.128)
-
identity=69.5; qcov=0.651; evalue=1.35e-40; confidence=medium
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:130991685

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057772015.1
2 Nucleolus 核仁 0.80000 XP_057772015.1
3 Nucleoplasm 核质 0.40000 XP_057772016.1
4 Chromosome 染色体 0.20000 XP_057772015.1
5 Centromere 着丝粒 0.00000 XP_057772015.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:3447292 C T EMS_canonical_SNV CDS_variant 2 C48,C82
Chr7:3447298 G A EMS_canonical_SNV CDS_variant 2 B77,C5
Chr7:3447445 G A EMS_canonical_SNV CDS_variant 4 A11,B135,C64,C66
Chr7:3447623 C T EMS_canonical_SNV CDS_variant 2 B140,B62
Chr7:3448428 G A EMS_canonical_SNV CDS_variant 3 A21,B101,C20
Chr7:3448982 G A EMS_canonical_SNV CDS_variant 4 A13,B37,C70,C82

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057916032.1
CACATATACATACAATATACATACACGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGGAAGGACTGACGGAAGACGAGAAAAAGGCGCTAAGAGGAAGCAAATTTGCGCCTCTTCCACCAGGAACCAATCAAACTCGACCCCAATCCAGGCTGGCACACCCTGGGGGGCCGATGAAGACAAACAAGGCGGCCGCCTTAGCAAAGTTCCTTGAAAGAAAGCTTCAGGAGCCAAATGGGCTTGCTTCT...
XM_057916033.1
CACATATACATACAATATACATACACGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGGAAGGACTGACGGAAGACGAGAAAAAGGCGCTAAGAGGAAGCAAATTTGCGCCTCTTCCACCAGGAACCAATCAAACTCGACCCCAATCCAGGCTGGCACACCCTGGGGGGCCGATGAAGACAAACAAGGCGGCCGCCTTAGCAAAGTTCCTTGAAAGAAAGCTTCAGGAGCCAAATGGGCTTGCTTCT...

CDS

2 records

下载 CDS FASTA
LOC130991685
ATGGAAGGACTGACGGAAGACGAGAAAAAGGCGCTAAGAGGAAGCAAATTTGCGCCTCTTCCACCAGGAACCAATCAAACTCGACCCCAATCCAGGCTGGCACACCCTGGGGGGCCGATGAAGACAAACAAGGCGGCCGCCTTAGCAAAGTTCCTTGAAAGAAAGCTTCAGGAGCCAAATGGGCTTGCTTCTGTTGATCCGAAGCTTGTTGAGTTAGCTGTGAGAAACGCCAAACAAACTGTTCAATGCAGTGGGGCTTC...
LOC130991685
ATGGAAGGACTGACGGAAGACGAGAAAAAGGCGCTAAGAGGAAGCAAATTTGCGCCTCTTCCACCAGGAACCAATCAAACTCGACCCCAATCCAGGCTGGCACACCCTGGGGGGCCGATGAAGACAAACAAGGCGGCCGCCTTAGCAAAGTTCCTTGAAAGAAAGCTTCAGGAGCCAAATGGGCTTGCTTCTGTTGATCCGAAGCTTGTTGAGTTAGCTGTGAGAAACGCCAAACAAACTGTTCAATGCAGTGGGGCTTC...

Protein

2 records

下载 Protein FASTA
XP_057772015.1
MEGLTEDEKKALRGSKFAPLPPGTNQTRPQSRLAHPGGPMKTNKAAALAKFLERKLQEPNGLASVDPKLVELAVRNAKQTVQCSGASTSGRIVHHVNKFDDVEDLEREDINGTSLPKKLKQKKKKKKKEKNQKKKQKKLDDSTTDVSNRPKKKLKL
XP_057772016.1
MEGLTEDEKKALRGSKFAPLPPGTNQTRPQSRLAHPGGPMKTNKAAALAKFLERKLQEPNGLASVDPKLVELAVRNAKQTVQCSGASTSGRIVHHVNKFDDVEDLEREDINGTSLPKKLKQKKKKKKKEKNQKKKQKILRAFAEIG

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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