当前解析结果
SmilChr07G000510| 统一新 Gene ID | SmilChr07G000510 |
|---|---|
| 名称 | SmilChr07G000510 |
| 描述 | F-box/LRR-repeat protein At3g26922-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 3586463 - 3588873 / + |
| NCBI Gene ID | LOC130991702 |
|---|---|
| GeneID | 130991702 |
| locus_tag | - |
| NCBI Name | LOC130991702 |
| 原始查询 | SmilChr07G000510 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | F-box/LRR-repeat protein At3g26922-like |
| 产物 | F-box/LRR-repeat protein At3g26922-like |
| Arabidopsis | AT3G26922 (AT3G26922)F-box/RNI-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:7922367] identity=28.8; qcov=0.577; evalue=3.01e-21; confidence=low |
| Rice | Os08g0460800 (OsFbox449)- identity=28.3; qcov=0.587; evalue=7.86e-14; confidence=low |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00646 (F-box); PF12937 (F-box-like); PF23622 (LRR_At1g61320_AtMIF1); PF24758 (LRR_At5g56370) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991702 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057772041.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057772041.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057772041.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057772041.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057772041.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:3586899 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A4,B111,B43,C34,C45 |
Chr7:3587039 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B78 |
Chr7:3587058 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A4,B122,B137,C76,D10 |
Chr7:3587066 |
A |
ATT |
2bp_insertion | frameshift_variant | 8 | A4,B122,B135,B137,B63,B65,C76,C86 |
Chr7:3587076 |
A |
AT |
1bp_insertion | frameshift_variant | 12 | A4,B122,B135,B137,B39,B63,B65,B88,C6,C76,C86,D5 |
Chr7:3587165 |
TAG |
T |
2bp_deletion | frameshift_variant | 2 | A18,B60 |
Chr7:3587165 |
TAG |
T |
2bp_deletion | CDS_variant | 2 | A18,B60 |
Chr7:3587167 |
GT |
G |
1bp_deletion | frameshift_variant | 3 | A4,B137,B26 |
Chr7:3587167 |
GT |
G |
1bp_deletion | CDS_variant | 3 | A4,B137,B26 |
Chr7:3587169 |
G |
GGT |
2bp_insertion | frameshift_variant | 2 | A18,B60 |
Chr7:3587169 |
G |
GGT |
2bp_insertion | CDS_variant | 2 | A18,B60 |
Chr7:3587194 |
C |
CT |
1bp_insertion | frameshift_variant | 19 | B106,B114,B115,B120,B123,B127,B135,B137,B14,B16,B61,B64,B66,B84,B85,B88,C29,C36,C46 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057772041.1PF00646
F-box 23-60 aa
PF12937
F-box-like 24-56 aa
PF23622
LRR_At1g61320_AtMIF1 87-267 aa
PF24758
LRR_At5g56370 103-235 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772041.1 |
Pfam | PF00646 |
F-box | Domain | 23 | 60 | 4.5e-09 | 36.6 | F-box domain |
XP_057772041.1 |
Pfam | PF12937 |
F-box-like | Domain | 24 | 56 | 4.6e-06 | 27.0 | F-box-like |
XP_057772041.1 |
Pfam | PF23622 |
LRR_At1g61320_AtMIF1 | Repeat | 87 | 267 | 1.9e-08 | 34.8 | At1g61320/AtMIF1, LRR domain |
XP_057772041.1 |
Pfam | PF24758 |
LRR_At5g56370 | Repeat | 103 | 235 | 1.1e-11 | 45.6 | FBD-associated F-box protein At5g56370, LRR repeats |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。