Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000512`

染色体: Chr07 坐标: 3595401-3597637 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000512`
名称	SmilChr07G000512
描述	F-box/LRR-repeat protein At3g26922-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	3595401 - 3597637 / `+`

ID 对照

NCBI Gene ID	`LOC130991704`
GeneID	`130991704`
locus_tag	`-`
NCBI Name	`LOC130991704`
原始查询	`SmilChr07G000512`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box/LRR-repeat protein At3g26922-like
产物	F-box/LRR-repeat protein At3g26922-like
Arabidopsis	`AT1G51370` (AT1G51370) F-box/RNI-like/FBD-like domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:841561] identity=26.4; qcov=0.987; evalue=1.23e-22; confidence=low
Rice	`Os10g0128200` (OsFbox517) - identity=28.5; qcov=0.574; evalue=9.68e-16; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00646 (F-box); PF12937 (F-box-like); PF23622 (LRR_At1g61320_AtMIF1); PF24758 (LRR_At5g56370)
InterPro	-
eggNOG	-
NR	GeneID:130991704

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057772043.1`
2	Chromosome	染色体	0.00000	`XP_057772043.1`
3	Centromere	着丝粒	0.00000	`XP_057772043.1`
4	Chromatin	染色质	0.00000	`XP_057772043.1`
5	Telomere	端粒	0.00000	`XP_057772043.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:3595544`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B138
`Chr7:3595553`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B77
`Chr7:3595573`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C28
`Chr7:3595581`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B138
`Chr7:3595641`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B138,B38
`Chr7:3595644`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B129,B38
`Chr7:3595836`	`AT`	`A`	1bp_deletion	frameshift_variant	1	B86
`Chr7:3595836`	`AT`	`A`	1bp_deletion	CDS_variant	1	B86
`Chr7:3595905`	`A`	`AC`	1bp_insertion	frameshift_variant	9	B1,B136,B2,B34,B37,B40,B49,C52,D4
`Chr7:3595911`	`AT`	`A`	1bp_deletion	frameshift_variant	9	B1,B136,B2,B34,B37,B40,B49,C52,D4
`Chr7:3595916`	`TG`	`T`	1bp_deletion	frameshift_variant	3	A21,B124,B125
`Chr7:3595916`	`TG`	`T`	1bp_deletion	CDS_variant	3	A21,B124,B125

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057772043.1

456 aa

228

456

F-box

F-box-like

LRR_At1g61320_AtMIF1

LRR_At5g56370

PF00646 F-box 23-60 aa PF12937 F-box-like 24-56 aa PF23622 LRR_At1g61320_AtMIF1 84-300 aa PF24758 LRR_At5g56370 104-243 aa

XP_057772045.1

453 aa

226

453

F-box

F-box-like

LRR_At1g61320_AtMIF1

LRR_At5g56370

PF00646 F-box 23-60 aa PF12937 F-box-like 24-56 aa PF23622 LRR_At1g61320_AtMIF1 84-345 aa PF24758 LRR_At5g56370 104-243 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057772043.1`	Pfam	`PF00646`	F-box	Domain	23	60	9.9e-09	35.5	F-box domain
`XP_057772043.1`	Pfam	`PF12937`	F-box-like	Domain	24	56	1.3e-06	28.8	F-box-like
`XP_057772043.1`	Pfam	`PF23622`	LRR_At1g61320_AtMIF1	Repeat	84	300	1.7e-09	38.3	At1g61320/AtMIF1, LRR domain
`XP_057772043.1`	Pfam	`PF24758`	LRR_At5g56370	Repeat	104	243	9.1e-11	42.6	FBD-associated F-box protein At5g56370, LRR repeats
`XP_057772045.1`	Pfam	`PF00646`	F-box	Domain	23	60	9.8e-09	35.5	F-box domain
`XP_057772045.1`	Pfam	`PF12937`	F-box-like	Domain	24	56	1.3e-06	28.8	F-box-like
`XP_057772045.1`	Pfam	`PF23622`	LRR_At1g61320_AtMIF1	Repeat	84	345	1.5e-09	38.4	At1g61320/AtMIF1, LRR domain
`XP_057772045.1`	Pfam	`PF24758`	LRR_At5g56370	Repeat	104	243	5.6e-11	43.2	FBD-associated F-box protein At5g56370, LRR repeats

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057916060.1
CACTTTCTTTCTTTTTTTTCTCTTGATCGAAAATTATTTCAATAAAATCATTTAATCCCAAGAATCAGTTTTAAAGGAGCTGATCAGTTTTTAGTCCTGTTTGGATTTGGATTAGTGAAACAATGGATGAATGGCACGATCGACTCAGTGAAGAAGCAAACATCGGTGATCTCCACCATCGAGATCGACTCAGTGAGTTACCTGACTCTTTAATTCTTGAAATCCTTTCATTGTTGGATACGAGAGATGTTGTTCGGACA...

XM_057916062.1
CACTTTCTTTCTTTTTTTTCTCTTGATCGAAAATTATTTCAATAAAATCATTTAATCCCAAGAATCAGTTTTAAAGGAGCTGATCAGTTTTTAGTCCTGTTTGGATTTGGATTAGTGAAACAATGGATGAATGGCACGATCGACTCAGTGAAGAAGCAAACATCGGTGATCTCCACCATCGAGATCGACTCAGTGAGTTACCTGACTCTTTAATTCTTGAAATCCTTTCATTGTTGGATACGAGAGATGTTGTTCGGACA...

CDS

2 records

下载 CDS FASTA

LOC130991704
ATGGATGAATGGCACGATCGACTCAGTGAAGAAGCAAACATCGGTGATCTCCACCATCGAGATCGACTCAGTGAGTTACCTGACTCTTTAATTCTTGAAATCCTTTCATTGTTGGATACGAGAGATGTTGTTCGGACATCCCTTCTCTCCAAACGTTGGGAAAACCTCTGGTCCACCATTCCCTGCCTTGATCTCTTGAAACAAACTCCAAGTGTTATCTCTAGTGTTGTTTCACAATGGAAAGGCCCCAAGATTCTGAA...

Protein

2 records

下载 Protein FASTA

XP_057772043.1
MDEWHDRLSEEANIGDLHHRDRLSELPDSLILEILSLLDTRDVVRTSLLSKRWENLWSTIPCLDLLKQTPSVISSVVSQWKGPKILKFRLSFPSFILGPSSSVIDSWLLFAIEKRVEELFLDLNSYKKVDYCLPQTLYTCSSITKLTLEDCKLRIEDNVQWHQLKTLEIRYPDWLSGDAMNQILLGAPLLEELVLKSFKIGENENFNIRSTSLKILKIQTGYIWHETTVLRIWAPNLLNFVLEARFHGTCLLDAPSLTHA...

XP_057772045.1
MDEWHDRLSEEANIGDLHHRDRLSELPDSLILEILSLLDTRDVVRTSLLSKRWENLWSTIPCLDLLKQTPSVISSVVSQWKGPKILKFRLSFPSFILGPSSSVIDSWLLFAIEKRVEELFLDLNSYKKVDYCLPQTLYTCSSITKLTLEDCKLRIEDNVQWHQLKTLEIRYPDWLSGDAMNQILLGAPLLEELVLKSFKIGENENFNIRSTSLKILKIQTGYIWHETTVLRIWAPNLLNFVLEARFHGTCLLDAPSLTHA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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