当前解析结果
SmilChr07G000518| 统一新 Gene ID | SmilChr07G000518 |
|---|---|
| 名称 | SmilChr07G000518 |
| 描述 | F-box/LRR-repeat protein At3g26922-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 3637886 - 3639731 / + |
| NCBI Gene ID | LOC130991708 |
|---|---|
| GeneID | 130991708 |
| locus_tag | - |
| NCBI Name | LOC130991708 |
| 原始查询 | SmilChr07G000518 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | F-box/LRR-repeat protein At3g26922-like |
| 产物 | F-box/LRR-repeat protein At3g26922-like |
| Arabidopsis | AT5G22670 (AT5G22670)F-box/RNI-like/FBD-like domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:832330] identity=27.3; qcov=0.996; evalue=5.82e-23; confidence=low |
| Rice | Os10g0128200 (OsFbox517)- identity=24.7; qcov=0.851; evalue=1.2e-15; confidence=weak |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00646 (F-box); PF12937 (F-box-like); PF23622 (LRR_At1g61320_AtMIF1); PF24758 (LRR_At5g56370) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991708 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057772051.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057772051.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057772051.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057772051.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057772051.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:3638033 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
Chr7:3638050 |
TA |
T |
1bp_deletion | frameshift_variant | 1 | B131 |
Chr7:3638050 |
TA |
T |
1bp_deletion | CDS_variant | 1 | B131 |
Chr7:3638063 |
AGT |
A |
2bp_deletion | frameshift_variant | 118 | A15,A16,A18,A22,A4,A7,A9,B102,B109,B11,B111,B112,B113,B119,B12,B123,B126,B128,B129,B13,B132,B134,B136,B139,B14,B17,B19,B21,B23,B24,B29,B3,B32,B34,B35,B4,B40,B41,B42,B43,B46,B47,B49,B52,B54,B56,B57,B59,B6,B60,B62,B68,B70,B73,B74,B76,B77,B79,B82,B85,B86,B9,B90,B91,B92,B94,B96,B97,B98,B99,C1,C11,C15,C16,C19,C2,C20,C21,C24,C26,C29,C30,C31,C33,C38,C39,C40,C41,C42,C43,C45,C48,C49,C50,C51,C52,C53,C54,C55,C58,C6,C60,C62,C64,C65,C66,C69,C71,C73,C75,C78,C80,C81,C82,C84,C87,D1,D9 |
Chr7:3638087 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B122,B15,C72,C79 |
Chr7:3638104 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C2 |
Chr7:3638135 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A8 |
Chr7:3638150 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B54,B99,C22,C73 |
Chr7:3638198 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B111,B118,B79 |
Chr7:3638202 |
CCT |
C |
2bp_deletion | frameshift_variant | 1 | C7 |
Chr7:3638202 |
CCT |
C |
2bp_deletion | CDS_variant | 1 | C7 |
Chr7:3638309 |
ACC |
A |
2bp_deletion | frameshift_variant | 23 | A1,A7,B111,B119,B120,B123,B128,B135,B23,B40,B43,B47,B66,B82,B91,C21,C29,C31,C45,C54,C69,C80,C82 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057772051.1PF00646
F-box 20-59 aa
PF12937
F-box-like 21-51 aa
PF23622
LRR_At1g61320_AtMIF1 87-205 aa
PF24758
LRR_At5g56370 108-222 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772051.1 |
Pfam | PF00646 |
F-box | Domain | 20 | 59 | 9.1e-07 | 29.3 | F-box domain |
XP_057772051.1 |
Pfam | PF12937 |
F-box-like | Domain | 21 | 51 | 1.1e-05 | 25.8 | F-box-like |
XP_057772051.1 |
Pfam | PF23622 |
LRR_At1g61320_AtMIF1 | Repeat | 87 | 205 | 3.4e-09 | 37.3 | At1g61320/AtMIF1, LRR domain |
XP_057772051.1 |
Pfam | PF24758 |
LRR_At5g56370 | Repeat | 108 | 222 | 9.2e-12 | 45.8 | FBD-associated F-box protein At5g56370, LRR repeats |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。