Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000525`

染色体: Chr07 坐标: 3664405-3677083 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000525`
名称	SmilChr07G000525
描述	FBD-associated F-box protein At5g22730-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	3664405 - 3677083 / `+`

ID 对照

NCBI Gene ID	`LOC130991706`
GeneID	`130991706`
locus_tag	`-`
NCBI Name	`LOC130991706`
原始查询	`SmilChr07G000525`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	FBD-associated F-box protein At5g22730-like
产物	FBD-associated F-box protein At5g22730-like
Arabidopsis	`AT5G22730` (AT5G22730) F-box/RNI-like/FBD-like domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:832336] identity=25.5; qcov=0.794; evalue=2.92e-20; confidence=low
Rice	`Os08g0281600` (OsFBX283) - identity=30.7; qcov=0.442; evalue=1.88e-14; confidence=low
GO	GO:0005515 (protein binding); GO:0008270 (zinc ion binding)
KEGG	-
Pfam	PF00646 (F-box); PF23622 (LRR_At1g61320_AtMIF1); PF24758 (LRR_At5g56370)
InterPro	-
eggNOG	-
NR	GeneID:130991706

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057772048.1`
2	Chromosome	染色体	0.00000	`XP_057772048.1`
3	Centromere	着丝粒	0.00000	`XP_057772048.1`
4	Chromatin	染色质	0.00000	`XP_057772048.1`
5	Telomere	端粒	0.00000	`XP_057772048.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:3664563`	`CCT`	`C`	2bp_deletion	frameshift_variant	1	B44
`Chr7:3664563`	`CCT`	`C`	2bp_deletion	CDS_variant	1	B44
`Chr7:3664566`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A16
`Chr7:3664691`	`C`	`CA`	1bp_insertion	frameshift_variant	4	B78,B87,C25,C52
`Chr7:3664691`	`C`	`CA`	1bp_insertion	CDS_variant	4	B78,B87,C25,C52
`Chr7:3664694`	`CGG`	`C`	2bp_deletion	frameshift_variant	115	A13,A14,A15,A16,A18,A19,A21,A23,A25,A4,A5,A6,A8,A9,B1,B102,B103,B104,B106,B109,B11,B110,B111,B118,B122,B124,B125,B127,B129,B130,B131,B136,B138,B139,B15,B17,B19,B20,B21,B22,B25,B27,B29,B30,B34,B36,B40,B41,B5,B50,B51,B57,B58,B59,B6,B62,B63,B64,B71,B75,B77,B8,B82,B84,B85,B87,B89,B94,B95,C10,C14,C15,C17,C18,C21,C26,C30,C33,C36,C38,C39,C4,C41,C42,C43,C44,C46,C5,C50,C51,C52,C53,C55,C57,C6,C60,C67,C7,C70,C71,C72,C73,C74,C75,C76,C79,C81,C84,C9,D1,D11,D3,D5,D7,D8
`Chr7:3664721`	`G`	`GT`	1bp_insertion	frameshift_variant	46	A10,A11,A22,A25,A6,A9,B119,B132,B17,B19,B24,B29,B31,B32,B4,B41,B49,B5,B52,B54,B56,B60,B61,B62,B65,B73,B77,B79,B9,B90,B92,B96,B99,C1,C10,C14,C19,C22,C31,C40,C49,C6,C63,C65,C73,C80
`Chr7:3674751`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr7:3674765`	`CCT`	`C`	2bp_deletion	frameshift_variant	1	B2
`Chr7:3674765`	`CCT`	`C`	2bp_deletion	CDS_variant	1	B2
`Chr7:3674769`	`AC`	`A`	1bp_deletion	frameshift_variant	1	B2
`Chr7:3674769`	`AC`	`A`	1bp_deletion	CDS_variant	1	B2

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057772048.1

570 aa

285

570

F-box

LRR_At1g61320_AtMIF1

LRR_At5g56370

PF00646 F-box 6-44 aa PF23622 LRR_At1g61320_AtMIF1 75-234 aa PF24758 LRR_At5g56370 98-215 aa

XP_057772049.1

568 aa

284

568

F-box

LRR_At1g61320_AtMIF1

LRR_At5g56370

PF00646 F-box 6-46 aa PF23622 LRR_At1g61320_AtMIF1 73-232 aa PF24758 LRR_At5g56370 96-213 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057772048.1`	Pfam	`PF00646`	F-box	Domain	6	44	5.5e-06	26.8	F-box domain
`XP_057772048.1`	Pfam	`PF23622`	LRR_At1g61320_AtMIF1	Repeat	75	234	3.8e-08	33.8	At1g61320/AtMIF1, LRR domain
`XP_057772048.1`	Pfam	`PF24758`	LRR_At5g56370	Repeat	98	215	7.8e-11	42.8	FBD-associated F-box protein At5g56370, LRR repeats
`XP_057772049.1`	Pfam	`PF00646`	F-box	Domain	6	46	1.1e-07	32.1	F-box domain
`XP_057772049.1`	Pfam	`PF23622`	LRR_At1g61320_AtMIF1	Repeat	73	232	3.8e-08	33.9	At1g61320/AtMIF1, LRR domain
`XP_057772049.1`	Pfam	`PF24758`	LRR_At5g56370	Repeat	96	213	7.8e-11	42.8	FBD-associated F-box protein At5g56370, LRR repeats

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057916066.1
TCGCATATTTGAAGCCATACCCAAATTTACCGCCCTCCTCACCGCCTCCATTCTTCCCTGTTGCCGCCGCTCTCTGCTCCTCGACCGAAAAACCGATTACACCGCCGGCAAGAGTTTTGAGTAGTGAAACAATGGATGATGATCGACTCAGTGAGTTACCTGACTCGTTAATCCTGACCATTCTTTCGTTGTTAGATATGAAAGATGTGGTTATGACATCCCTTCTCTCCAAACGATGGAAGAATCGATGGACCACCGTC...

XM_057916065.1
TCATCTCAACTTCTTGAAGGTGTTGAGAGTTGAGACTTGCTTTGTAGATTCAAATTTATTTTTATTTTCATGCTCCTTTCTCTCATTATCTTAAGAATCAGTTTCAAAAGAATCCGATAGGAGAGTTTTGAGTAGTGAAACAATGGATGATGATCGACTCAGTGAGTTACCTGACTCGTTAATCCTCTCCATTCTTTTGTTGTTGGATACGAGAGAGGTGATTAGGACAACCCTTCTCTCCAAACGATGGAAGAATCGAT...

CDS

2 records

下载 CDS FASTA

LOC130991706
ATGGATGATGATCGACTCAGTGAGTTACCTGACTCGTTAATCCTGACCATTCTTTCGTTGTTAGATATGAAAGATGTGGTTATGACATCCCTTCTCTCCAAACGATGGAAGAATCGATGGACCACCGTCCCCTGCCTTCGTTTTGACCTTCCTTTCTCCGGTGGTTTATGGGTTGAATATTCAAAGTTTGTTTCTGGGGCTCTTGCACAATGGAAAGGTGCCAAGATTCTGGAGTTCACCATATTCTTCTCCTCTAATGA...

LOC130991706
ATGGATGATGATCGACTCAGTGAGTTACCTGACTCGTTAATCCTCTCCATTCTTTTGTTGTTGGATACGAGAGAGGTGATTAGGACAACCCTTCTCTCCAAACGATGGAAGAATCGATGGACCACCATCCCCTGCCTTCGCTTTCGCTCTCGCTTTCCTTTCTCCCGTGATTTATTGGTTGAATCTTCAAACTTCATTTCTGGGGCTCTTGCACAATGGAAAGGTGCCAAGATTCTGGAGTTCACCATATTCTTCTCCTC...

Protein

2 records

下载 Protein FASTA

XP_057772048.1
MDDDRLSELPDSLILSILLLLDTREVIRTTLLSKRWKNRWTTIPCLRFRSRFPFSRDLLVESSNFISGALAQWKGAKILEFTIFFSSNDPLTPSCDTDSWLLFATEKQVEKLTFGFECRPHGAYFVPQCLYSCSSITTLSLYCCSFKIERNVRWNQLKSLNIRKSEGLSGDAMNQILLGAPRLEKLVLRSFEISENFTIRSTSLMILEIIECNLKAEAELRIWAPNLLSLEISAYVCGSCLLYVPSLITAILSFEIFCGE...

XP_057772049.1
MDDDRLSELPDSLILTILSLLDMKDVVMTSLLSKRWKNRWTTVPCLRFDLPFSGGLWVEYSKFVSGALAQWKGAKILEFTIFFSSNDPLTPSCDTDSWLLFATEKQVEKLTFGFECRPHGAYFVPQCLYSCSSITTLSLYCCSFKIERNVRWNQLKSLNIRKSEGLSGDAMNQILLGAPRLEKLVLRSFEISENFTIRSTSLMILEIIECNLKAEAELRIWAPNLLSLEISAYVCGSCLLYVPSLITAILSFEIFCGELD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器