当前解析结果
SmilChr07G000534| 统一新 Gene ID | SmilChr07G000534 |
|---|---|
| 名称 | SmilChr07G000534 |
| 描述 | F-box protein At5g03100-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 3710408 - 3712902 / - |
| NCBI Gene ID | LOC130991719 |
|---|---|
| GeneID | 130991719 |
| locus_tag | - |
| NCBI Name | LOC130991719 |
| 原始查询 | SmilChr07G000534 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | F-box protein At5g03100-like |
| 产物 | F-box protein At5g03100-like |
| Arabidopsis | AT5G56440 (AT5G56440)F-box/RNI-like/FBD-like domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:835745] identity=30.8; qcov=0.562; evalue=2.98e-19; confidence=low |
| Rice | Os06g0556300 (OsFbox313)- identity=28; qcov=0.609; evalue=7.26e-12; confidence=low |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00646 (F-box); PF24758 (LRR_At5g56370) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991719 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057772064.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057772064.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057772064.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057772064.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057772064.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:3710493 |
C |
CT |
1bp_insertion | frameshift_variant | 57 | A1,A11,A13,A25,A3,A4,A8,B104,B11,B114,B117,B12,B122,B128,B13,B20,B25,B28,B35,B45,B48,B5,B53,B55,B65,B66,B67,B69,B71,B72,B74,B77,B79,B8,B83,B91,B93,B94,C12,C18,C21,C27,C28,C34,C35,C37,C42,C5,C51,C58,C59,C65,C70,C83,C86,D5,D8 |
Chr7:3710517 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B82,C83 |
Chr7:3710612 |
C |
CA |
1bp_insertion | frameshift_variant | 161 | A1,A10,A14,A15,A16,A18,A19,A20,A21,A22,A23,A3,A6,A7,A9,B10,B101,B102,B103,B106,B107,B109,B112,B113,B117,B118,B120,B121,B122,B124,B125,B126,B127,B128,B129,B130,B132,B135,B136,B137,B138,B139,B140,B15,B16,B17,B18,B19,B2,B20,B22,B23,B25,B26,B27,B29,B3,B30,B31,B34,B36,B37,B38,B39,B40,B41,B42,B43,B44,B46,B47,B5,B50,B54,B57,B58,B59,B6,B61,B62,B63,B64,B65,B66,B68,B7,B70,B71,B73,B75,B76,B78,B81,B82,B84,B86,B89,B9,B93,B94,B97,C10,C12,C13,C14,C15,C16,C17,C2,C20,C23,C24,C25,C26,C29,C3,C31,C34,C36,C4,C41,C43,C44,C45,C46,C47,C5,C50,C53,C54,C55,C56,C59,C6,C60,C62,C63,C64,C66,C67,C68,C71,C72,C73,C78,C79,C8,C80,C81,C82,C85,C86,C9,D1,D10,D11,D4,D5,D6,D7,D9 |
Chr7:3710749 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | C13,C34,C54,C56,C67 |
Chr7:3711297 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A24,B105 |
Chr7:3711306 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A24,B105,B137,C61 |
Chr7:3711368 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C35 |
Chr7:3711571 |
A |
AGT |
2bp_insertion | stop_gained,frameshift_variant | 8 | A8,B100,B42,B48,B88,C11,C28,C45 |
Chr7:3711572 |
CAA |
C |
2bp_deletion | frameshift_variant | 8 | A8,B100,B42,B48,B88,C11,C28,C45 |
Chr7:3711635 |
AG |
A |
1bp_deletion | frameshift_variant | 1 | B104 |
Chr7:3711635 |
AG |
A |
1bp_deletion | CDS_variant | 1 | B104 |
Chr7:3711696 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D5 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057772064.1PF00646
F-box 24-64 aa
PF24758
LRR_At5g56370 103-242 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772064.1 |
Pfam | PF00646 |
F-box | Domain | 24 | 64 | 5e-08 | 33.3 | F-box domain |
XP_057772064.1 |
Pfam | PF24758 |
LRR_At5g56370 | Repeat | 103 | 242 | 1.4e-09 | 38.7 | FBD-associated F-box protein At5g56370, LRR repeats |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。