当前解析结果
SmilChr07G000544| 统一新 Gene ID | SmilChr07G000544 |
|---|---|
| 名称 | SmilChr07G000544 |
| 描述 | F-box/LRR-repeat protein At3g26922-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 3746533 - 3748899 / - |
| NCBI Gene ID | LOC130993072 |
|---|---|
| GeneID | 130993072 |
| locus_tag | - |
| NCBI Name | LOC130993072 |
| 原始查询 | SmilChr07G000544 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | F-box/LRR-repeat protein At3g26922-like |
| 产物 | F-box/LRR-repeat protein At3g26922-like |
| Arabidopsis | AT5G02930 (AT5G02930)F-box/RNI-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831737] identity=30.7; qcov=0.938; evalue=3.69e-26; confidence=low |
| Rice | Os02g0537200 (OsFbox094)- identity=27.9; qcov=0.541; evalue=8.58e-15; confidence=low |
| GO | GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF00646 (F-box); PF23622 (LRR_At1g61320_AtMIF1); PF24758 (LRR_At5g56370) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993072 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057773776.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057773776.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057773776.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057773776.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057773776.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:3746531 |
GCT |
G |
2bp_deletion | frameshift_variant | 13 | B19,B42,B55,B58,B63,B64,B81,C13,C34,C57,C64,C82,C85 |
Chr7:3746563 |
ATC |
A |
2bp_deletion | frameshift_variant | 20 | A13,A14,A19,A4,A8,B103,B106,B120,B16,B31,B61,B74,B86,C15,C29,C52,C75,D2,D3,D4 |
Chr7:3746568 |
C |
CT |
1bp_insertion | frameshift_variant | 62 | A15,A7,A9,B10,B100,B111,B113,B121,B128,B129,B130,B132,B140,B19,B20,B27,B30,B32,B35,B36,B39,B42,B45,B47,B5,B52,B54,B56,B60,B66,B67,B69,B72,B83,B84,B91,B93,B97,B99,C11,C18,C19,C23,C45,C49,C50,C53,C57,C58,C59,C64,C67,C70,C75,C78,C81,C83,C84,D1,D6,D8,D9 |
Chr7:3746653 |
A |
AT |
1bp_insertion | stop_gained,frameshift_variant | 31 | A10,A9,B129,B140,B27,B42,B45,B47,B52,B56,B6,B69,B72,B83,C18,C19,C23,C24,C29,C45,C49,C57,C58,C67,C74,C75,C81,C84,D6,D8,D9 |
Chr7:3746655 |
A |
AG |
1bp_insertion | frameshift_variant | 31 | A10,A9,B129,B140,B27,B42,B45,B47,B52,B56,B6,B69,B72,B83,C18,C19,C23,C24,C29,C45,C49,C57,C58,C67,C74,C75,C81,C84,D6,D8,D9 |
Chr7:3746658 |
T |
TCC |
2bp_insertion | frameshift_variant | 38 | A10,A3,A7,B10,B100,B129,B140,B20,B27,B30,B39,B42,B45,B47,B5,B52,B56,B6,B66,B69,B72,B83,C18,C19,C23,C29,C45,C49,C57,C58,C64,C67,C75,C81,C84,D6,D8,D9 |
Chr7:3746700 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B106,C37,D7 |
Chr7:3746759 |
A |
AAT |
2bp_insertion | frameshift_variant | 3 | A10,B83,C81 |
Chr7:3746759 |
A |
AAT |
2bp_insertion | CDS_variant | 3 | A10,B83,C81 |
Chr7:3746762 |
AC |
A |
1bp_deletion | frameshift_variant | 2 | A10,C81 |
Chr7:3746762 |
AC |
A |
1bp_deletion | CDS_variant | 2 | A10,C81 |
Chr7:3746778 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A10,B45,C81 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057773776.1PF00646
F-box 13-53 aa
PF23622
LRR_At1g61320_AtMIF1 87-232 aa
PF24758
LRR_At5g56370 90-207 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057773776.1 |
Pfam | PF00646 |
F-box | Domain | 13 | 53 | 1.3e-06 | 28.8 | F-box domain |
XP_057773776.1 |
Pfam | PF23622 |
LRR_At1g61320_AtMIF1 | Repeat | 87 | 232 | 5.8e-08 | 33.2 | At1g61320/AtMIF1, LRR domain |
XP_057773776.1 |
Pfam | PF24758 |
LRR_At5g56370 | Repeat | 90 | 207 | 1.2e-11 | 45.5 | FBD-associated F-box protein At5g56370, LRR repeats |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。