Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000556`

染色体: Chr07 坐标: 3836456-3838232 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000556`
名称	SmilChr07G000556
描述	F-box/kelch-repeat protein At3g06240-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	3836456 - 3838232 / `-`

ID 对照

NCBI Gene ID	`LOC130991737`
GeneID	`130991737`
locus_tag	`-`
NCBI Name	`LOC130991737`
原始查询	`SmilChr07G000556`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box/kelch-repeat protein At3g06240-like
产物	F-box/kelch-repeat protein At3g06240-like
Arabidopsis	`AT3G06240` (AT3G06240) F-box family protein [Source:NCBI gene (formerly Entrezgene);Acc:819798] identity=31.2; qcov=1.11; evalue=2.97e-44; confidence=low
Rice	`Os09g0372900` (OsFbox482) - identity=27.8; qcov=0.809; evalue=8.47e-18; confidence=low
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00646 (F-box); PF07734 (FBA_1); PF08268 (FBA_3); PF12937 (F-box-like); PF24750 (b-prop_At3g26010-like)
InterPro	-
eggNOG	-
NR	GeneID:130991737

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.80000	`XP_057772091.1`
2	Cytoplasm	细胞质	0.80000	`XP_057772091.1`
3	Cytosol	细胞质基质	0.40000	`XP_057772091.1`
4	Chromosome	染色体	0.00000	`XP_057772091.1`
5	Centromere	着丝粒	0.00000	`XP_057772091.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:3837125`	`G`	`GC`	1bp_insertion	frameshift_variant	1	C86
`Chr7:3837125`	`G`	`GC`	1bp_insertion	CDS_variant	1	C86
`Chr7:3837131`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B132,D4
`Chr7:3837155`	`C`	`CTT`	2bp_insertion	frameshift_variant	35	A1,A21,A25,A6,A9,B102,B12,B122,B124,B125,B127,B129,B14,B22,B25,B27,B29,B35,B40,B57,B66,B71,B85,B89,C15,C20,C36,C4,C42,C44,C53,C6,C63,D5,D8
`Chr7:3837260`	`A`	`ACC`	2bp_insertion	frameshift_variant	3	B78,B87,C52
`Chr7:3837260`	`A`	`ACC`	2bp_insertion	CDS_variant	3	B78,B87,C52
`Chr7:3837274`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr7:3837314`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B40,B71
`Chr7:3837335`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B16,B87
`Chr7:3837444`	`CG`	`C`	1bp_deletion	frameshift_variant	29	A1,A21,A25,A6,A9,B102,B12,B122,B123,B127,B14,B22,B25,B27,B40,B50,B57,B66,B71,B85,C20,C36,C4,C42,C44,C53,C63,D5,D8
`Chr7:3837464`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B44,D11
`Chr7:3837471`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B86,C76

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057772091.1

356 aa

178

356

F-box-like

F-box

FBA_1

FBA_3

b-prop_At3g26010-like

PF12937 F-box-like 5-42 aa PF00646 F-box 5-43 aa PF07734 FBA_1 70-308 aa PF08268 FBA_3 80-333 aa PF24750 b-prop_At3g26010-like 84-224 aa

XP_057772093.1

356 aa

178

356

F-box-like

F-box

FBA_1

FBA_3

b-prop_At3g26010-like

PF12937 F-box-like 5-42 aa PF00646 F-box 5-43 aa PF07734 FBA_1 70-308 aa PF08268 FBA_3 80-333 aa PF24750 b-prop_At3g26010-like 84-224 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057772091.1`	Pfam	`PF12937`	F-box-like	Domain	5	42	1.9e-08	34.7	F-box-like
`XP_057772091.1`	Pfam	`PF00646`	F-box	Domain	5	43	3.3e-09	37.0	F-box domain
`XP_057772091.1`	Pfam	`PF07734`	FBA_1	Repeat	70	308	6.3e-22	78.7	F-box associated beta propeller domain
`XP_057772091.1`	Pfam	`PF08268`	FBA_3	Repeat	80	333	6e-19	68.9	F-box associated beta propeller domain
`XP_057772091.1`	Pfam	`PF24750`	b-prop_At3g26010-like	Repeat	84	224	7.1e-08	32.6	F-box protein At3g26010-like, beta-propeller
`XP_057772093.1`	Pfam	`PF12937`	F-box-like	Domain	5	42	1.9e-08	34.7	F-box-like
`XP_057772093.1`	Pfam	`PF00646`	F-box	Domain	5	43	3.3e-09	37.0	F-box domain
`XP_057772093.1`	Pfam	`PF07734`	FBA_1	Repeat	70	308	6.3e-22	78.7	F-box associated beta propeller domain
`XP_057772093.1`	Pfam	`PF08268`	FBA_3	Repeat	80	333	6e-19	68.9	F-box associated beta propeller domain
`XP_057772093.1`	Pfam	`PF24750`	b-prop_At3g26010-like	Repeat	84	224	7.1e-08	32.6	F-box protein At3g26010-like, beta-propeller

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057916108.1
TATATAAATTTAGTTTCCCCTTTCAAATTCACAAAACCTTGTCCAAATTTGAAGAAATTATGGCGACAACCGACCTTCCCCAAGAAATCTTGATCGACATTTTCTCCCGGCTGCCGGCAAAATCAGTTGGAAAATGCAGATGCTTAGCTAAAACATGGCGAACTCTTCTCTCCACCCCTCAATTCATCAAATCCCACCTCATCCGAAAACCCCATCAACAAAATCTCATTCTCATAGCGCCGTCCGGTTCCGTCCACTTC...

XM_057916110.1
TATATAAATTTAGTTTCCCCTTTCAAATTCACAAAACCTTGTCCAAATTTGAAGAAATTATGGCGACAACCGACCTTCCCCAAGAAATCTTGATCGACATTTTCTCCCGGCTGCCGGCAAAATCAGTTGGAAAATGCAGATGCTTAGCTAAAACATGGCGAACTCTTCTCTCCACCCCTCAATTCATCAAATCCCACCTCATCCGAAAACCCCATCAACAAAATCTCATTCTCATAGCGCCGTCCGGTTCCGTCCACTTC...

CDS

2 records

下载 CDS FASTA

LOC130991737
ATGGCGACAACCGACCTTCCCCAAGAAATCTTGATCGACATTTTCTCCCGGCTGCCGGCAAAATCAGTTGGAAAATGCAGATGCTTAGCTAAAACATGGCGAACTCTTCTCTCCACCCCTCAATTCATCAAATCCCACCTCATCCGAAAACCCCATCAACAAAATCTCATTCTCATAGCGCCGTCCGGTTCCGTCCACTTCGCCGCCTCCGCCGCCGTTGACGGGGCCGTCTCAAGAAAGCTCCAATCCCCGGAAAATAT...

Protein

2 records

下载 Protein FASTA

XP_057772091.1
MATTDLPQEILIDIFSRLPAKSVGKCRCLAKTWRTLLSTPQFIKSHLIRKPHQQNLILIAPSGSVHFAASAAVDGAVSRKLQSPENMIEVAGSCDGLVLLVDEDRKLLVNPITQQQIEITDSPLALTKRESFSMYGLGHDRINDDYKIVALSYWDTDNEHNPDCADTFVDVYSVTRGVWKRVDNSPYDHAVPHLSCGAFVSGAIHWLASSREEGYTSVIAAFDLAREVFDEMPAPSGVDLGKFVFWKLVVLEGCLCLVDA...

XP_057772093.1
MATTDLPQEILIDIFSRLPAKSVGKCRCLAKTWRTLLSTPQFIKSHLIRKPHQQNLILIAPSGSVHFAASAAVDGAVSRKLQSPENMIEVAGSCDGLVLLVDEDRKLLVNPITQQQIEITDSPLALTKRESFSMYGLGHDRINDDYKIVALSYWDTDNEHNPDCADTFVDVYSVTRGVWKRVDNSPYDHAVPHLSCGAFVSGAIHWLASSREEGYTSVIAAFDLAREVFDEMPAPSGVDLGKFVFWKLVVLEGCLCLVDA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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