当前解析结果
SmilChr07G000563| 统一新 Gene ID | SmilChr07G000563 |
|---|---|
| 名称 | SmilChr07G000563 |
| 描述 | putative late blight resistance protein homolog R1B-16 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 3860879 - 3863873 / - |
| NCBI Gene ID | LOC130991741 |
|---|---|
| GeneID | 130991741 |
| locus_tag | - |
| NCBI Name | LOC130991741 |
| 原始查询 | SmilChr07G000563 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1B-16 |
| 产物 | putative late blight resistance protein homolog R1B-16 |
| Arabidopsis | AT5G35450 (AT5G35450)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:833508] identity=27.1; qcov=1.04; evalue=8.92e-75; confidence=low |
| Rice | Os07g0186500- identity=32.4; qcov=0.756; evalue=3.27e-78; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991741 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057772097.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057772097.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057772097.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057772097.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057772097.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:3861243 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B2 |
Chr7:3861256 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B78,B87,C52 |
Chr7:3861325 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C68 |
Chr7:3861373 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B140,B78,C74 |
Chr7:3861381 |
TG |
T |
1bp_deletion | frameshift_variant | 4 | B34,B80,C34,C56 |
Chr7:3861381 |
TG |
T |
1bp_deletion | CDS_variant | 4 | B34,B80,C34,C56 |
Chr7:3861401 |
C |
CT |
1bp_insertion | frameshift_variant | 1 | A4 |
Chr7:3861401 |
C |
CT |
1bp_insertion | CDS_variant | 1 | A4 |
Chr7:3861545 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B12,B134,B40,B71,C42 |
Chr7:3861567 |
G |
GAT |
2bp_insertion | frameshift_variant | 197 | A1,A10,A11,A13,A14,A15,A16,A18,A19,A2,A20,A23,A25,A3,A4,A5,A6,A7,A8,B1,B10,B100,B101,B103,B105,B106,B107,B108,B11,B110,B111,B112,B113,B114,B115,B117,B118,B12,B122,B123,B124,B125,B126,B127,B128,B129,B13,B130,B131,B132,B133,B134,B137,B138,B139,B140,B15,B16,B17,B19,B2,B20,B21,B23,B25,B26,B28,B3,B30,B31,B32,B33,B34,B35,B36,B37,B38,B39,B40,B44,B45,B46,B47,B48,B49,B5,B53,B54,B56,B57,B59,B61,B62,B63,B64,B65,B68,B69,B7,B71,B72,B73,B75,B76,B77,B78,B79,B8,B80,B81,B82,B83,B84,B85,B89,B9,B90,B91,B92,B94,B95,B97,B98,C1,C11,C12,C13,C14,C16,C18,C2,C20,C21,C23,C25,C26,C27,C28,C29,C3,C33,C34,C35,C37,C38,C39,C41,C42,C43,C45,C46,C47,C48,C49,C5,C50,C51,C52,C53,C55,C56,C57,C59,C60,C62,C64,C66,C67,C69,C7,C70,C71,C72,C73,C74,C75,C76,C78,C79,C8,C81,C82,C83,C84,C85,C86,C87,C9,D10,D11,D3,D4,D5,D6,D7,D8,D9 |
Chr7:3861569 |
G |
GAA |
2bp_insertion | frameshift_variant | 102 | A13,A14,A16,A23,A24,A25,A3,A4,A6,A8,B1,B10,B100,B103,B110,B111,B113,B115,B117,B119,B12,B120,B123,B124,B125,B127,B128,B131,B132,B133,B139,B20,B21,B22,B26,B27,B28,B29,B3,B34,B35,B36,B47,B48,B5,B50,B51,B53,B54,B56,B57,B63,B65,B67,B72,B75,B76,B77,B78,B80,B81,B83,B85,B87,B89,B91,B93,B94,B98,C13,C14,C17,C2,C20,C23,C25,C27,C28,C29,C30,C31,C34,C36,C41,C43,C44,C46,C52,C53,C56,C59,C60,C62,C63,C74,C77,C84,C86,C87,D11,D6,D9 |
Chr7:3861581 |
A |
AGC |
2bp_insertion | frameshift_variant | 144 | A10,A11,A13,A16,A18,A19,A2,A23,A25,A3,A4,A6,A7,A8,B1,B10,B100,B105,B106,B107,B108,B110,B111,B113,B114,B117,B118,B12,B122,B124,B125,B126,B128,B129,B13,B130,B132,B134,B139,B15,B17,B19,B2,B20,B23,B25,B26,B3,B30,B31,B34,B35,B36,B37,B40,B44,B45,B46,B47,B51,B53,B54,B56,B61,B62,B63,B65,B68,B7,B71,B72,B75,B76,B77,B81,B82,B83,B89,B90,B92,B95,B97,C1,C10,C11,C12,C14,C16,C18,C2,C21,C23,C26,C27,C28,C29,C31,C32,C33,C34,C39,C42,C43,C46,C47,C48,C49,C5,C50,C51,C53,C55,C56,C57,C59,C62,C64,C66,C67,C68,C69,C7,C70,C71,C72,C73,C76,C78,C79,C8,C81,C83,C84,C85,C86,C9,D11,D3,D4,D5,D6,D7,D8,D9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057772097.1PF00931
NB-ARC 159-325 aa
PF23559
WHD_DRP 410-480 aa
PF23598
LRR_14 552-749 aa
XP_057772098.1PF00931
NB-ARC 159-325 aa
PF23559
WHD_DRP 410-480 aa
PF23598
LRR_14 552-749 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772097.1 |
Pfam | PF00931 |
NB-ARC | Domain | 159 | 325 | 2e-40 | 138.9 | NB-ARC domain |
XP_057772097.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 410 | 480 | 2.8e-21 | 76.0 | Disease resistance protein Winged helix domain |
XP_057772097.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 552 | 749 | 2.1e-14 | 53.8 | Leucine-rich repeat region |
XP_057772098.1 |
Pfam | PF00931 |
NB-ARC | Domain | 159 | 325 | 2e-40 | 138.9 | NB-ARC domain |
XP_057772098.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 410 | 480 | 2.8e-21 | 76.0 | Disease resistance protein Winged helix domain |
XP_057772098.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 552 | 749 | 2.1e-14 | 53.8 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。