当前解析结果
SmilChr07G000566| 统一新 Gene ID | SmilChr07G000566 |
|---|---|
| 名称 | SmilChr07G000566 |
| 描述 | bidirectional sugar transporter SWEET6b-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 3867742 - 3869431 / - |
| NCBI Gene ID | LOC130991742 |
|---|---|
| GeneID | 130991742 |
| locus_tag | - |
| NCBI Name | LOC130991742 |
| 原始查询 | SmilChr07G000566 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | bidirectional sugar transporter SWEET6b-like |
| 产物 | bidirectional sugar transporter SWEET6b-like |
| Arabidopsis | AT4G10850 (SWEET7)Nodulin MtN3 family protein [Source:NCBI gene (formerly Entrezgene);Acc:826682] identity=48.9; qcov=0.97; evalue=2.29e-74; confidence=high |
| Rice | Os01g0605700 (OsSWEET6b)- identity=49.6; qcov=0.958; evalue=2.81e-76; confidence=high |
| GO | GO:0008643 (carbohydrate transport); GO:0016020 (membrane); GO:0051119 (sugar transmembrane transporter activity) |
| KEGG | - |
| Pfam | PF03083 (MtN3_slv) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991742 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057772099.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057772099.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057772099.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057772099.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057772099.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:3867886 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr7:3867955 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
Chr7:3868202 |
T |
TA |
1bp_insertion | frameshift_variant | 1 | C72 |
Chr7:3868202 |
T |
TA |
1bp_insertion | CDS_variant | 1 | C72 |
Chr7:3868217 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C83 |
Chr7:3868333 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B34,B80,C13,C34 |
Chr7:3868343 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B87 |
Chr7:3868368 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
Chr7:3868425 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B34,C13,C34,C56 |
Chr7:3868431 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B65,D10 |
Chr7:3868442 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A19,C72 |
Chr7:3868456 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B132,D4 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057772099.1PF03083
MtN3_slv 10-97 aa
PF03083
MtN3_slv 133-217 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772099.1 |
Pfam | PF03083 |
MtN3_slv | Repeat | 10 | 97 | 2.3e-42 | 143.6 | Sugar efflux transporter for intercellular exchange |
XP_057772099.1 |
Pfam | PF03083 |
MtN3_slv | Repeat | 133 | 217 | 2.3e-42 | 143.6 | Sugar efflux transporter for intercellular exchange |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。