当前解析结果
SmilChr07G000570| 统一新 Gene ID | SmilChr07G000570 |
|---|---|
| 名称 | SmilChr07G000570 |
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 3875025 - 3877538 / + |
| NCBI Gene ID | LOC130993077 |
|---|---|
| GeneID | 130993077 |
| locus_tag | - |
| NCBI Name | LOC130993077 |
| 原始查询 | SmilChr07G000570 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 产物 | putative late blight resistance protein homolog R1A-10 |
| Arabidopsis | AT5G35450 (AT5G35450)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:833508] identity=29.1; qcov=0.994; evalue=9.39e-81; confidence=low |
| Rice | Os07g0186500- identity=30; qcov=0.975; evalue=1.42e-80; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993077 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057773782.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057773782.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057773782.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057773782.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057773782.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:3875127 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B92,C21 |
Chr7:3875130 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr7:3875132 |
CA |
C |
1bp_deletion | frameshift_variant | 14 | A11,A2,A5,B106,B123,B14,B85,C18,C33,C5,C55,C58,C8,D5 |
Chr7:3875135 |
A |
AT |
1bp_insertion | stop_gained,frameshift_variant | 14 | A11,A2,A5,B106,B123,B14,B85,C18,C33,C5,C55,C58,C8,D5 |
Chr7:3875178 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B78,B87,C52 |
Chr7:3875220 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B104,C47,D3 |
Chr7:3875272 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B104,C47,D3 |
Chr7:3875273 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C39 |
Chr7:3875279 |
AGG |
A |
2bp_deletion | frameshift_variant | 6 | A7,B52,B57,B58,C81,C9 |
Chr7:3875291 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B52,B57,B58,C81,C9 |
Chr7:3875318 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C47,D3 |
Chr7:3875328 |
C |
CA |
1bp_insertion | frameshift_variant | 2 | B42,C45 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057773782.1PF00931
NB-ARC 149-315 aa
PF23559
WHD_DRP 400-470 aa
PF23598
LRR_14 543-823 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057773782.1 |
Pfam | PF00931 |
NB-ARC | Domain | 149 | 315 | 3.2e-41 | 141.5 | NB-ARC domain |
XP_057773782.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 400 | 470 | 3e-21 | 76.0 | Disease resistance protein Winged helix domain |
XP_057773782.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 543 | 823 | 4.9e-16 | 59.2 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。