当前解析结果
SmilChr07G000571| 统一新 Gene ID | SmilChr07G000571 |
|---|---|
| 名称 | SmilChr07G000571 |
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 3884751 - 3888141 / + |
| NCBI Gene ID | LOC130991745 |
|---|---|
| GeneID | 130991745 |
| locus_tag | - |
| NCBI Name | LOC130991745 |
| 原始查询 | SmilChr07G000571 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 产物 | putative late blight resistance protein homolog R1A-10 |
| Arabidopsis | AT5G35450 (AT5G35450)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:833508] identity=28.4; qcov=1.04; evalue=8.56e-80; confidence=low |
| Rice | Os07g0186500- identity=32.5; qcov=0.766; evalue=4.25e-83; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991745 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057772103.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057772103.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057772103.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057772103.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057772103.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:3885149 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C84 |
Chr7:3885157 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | C84 |
Chr7:3885157 |
AC |
A |
1bp_deletion | CDS_variant | 1 | C84 |
Chr7:3885211 |
GT |
G |
1bp_deletion | frameshift_variant | 23 | A2,A22,B125,B131,B133,B136,B140,B21,B46,B47,B55,B77,B81,B96,C30,C33,C43,C45,C56,C75,C80,C87,D6 |
Chr7:3885214 |
G |
GGA |
2bp_insertion | frameshift_variant | 23 | A2,A22,B125,B131,B133,B136,B140,B21,B46,B47,B55,B77,B81,B96,C30,C33,C43,C45,C56,C75,C80,C87,D6 |
Chr7:3885218 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A5,B85,C14,C38 |
Chr7:3885252 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B87 |
Chr7:3885348 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B19,C41,C9 |
Chr7:3885351 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B19,C41,C65,C9 |
Chr7:3885362 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B23,C82,D4 |
Chr7:3885385 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B23,C82 |
Chr7:3885393 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B23,C82 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057772103.1PF00931
NB-ARC 159-325 aa
PF23559
WHD_DRP 410-480 aa
PF23598
LRR_14 533-742 aa
XP_057772104.1PF00931
NB-ARC 159-325 aa
PF23559
WHD_DRP 410-480 aa
PF23598
LRR_14 533-742 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772103.1 |
Pfam | PF00931 |
NB-ARC | Domain | 159 | 325 | 1.7e-40 | 139.1 | NB-ARC domain |
XP_057772103.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 410 | 480 | 3.2e-21 | 75.9 | Disease resistance protein Winged helix domain |
XP_057772103.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 533 | 742 | 8.1e-13 | 48.6 | Leucine-rich repeat region |
XP_057772104.1 |
Pfam | PF00931 |
NB-ARC | Domain | 159 | 325 | 1.7e-40 | 139.1 | NB-ARC domain |
XP_057772104.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 410 | 480 | 3.2e-21 | 75.9 | Disease resistance protein Winged helix domain |
XP_057772104.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 533 | 742 | 8.1e-13 | 48.6 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。