Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000575`

染色体: Chr07 坐标: 3912922-3916352 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000575`
名称	SmilChr07G000575
描述	uncharacterized SmilChr07G000575
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	3912922 - 3916352 / `+`

ID 对照

NCBI Gene ID	`LOC130991748`
GeneID	`130991748`
locus_tag	`-`
NCBI Name	`LOC130991748`
原始查询	`SmilChr07G000575`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os05g0273800; species=rice; confidence=high
产物	hit=Os05g0273800; species=rice; confidence=high
Arabidopsis	`AT4G02340` (AT4G02340) alpha/beta-Hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:828063] identity=55.3; qcov=1.01; evalue=1.71e-135; confidence=high
Rice	`Os05g0273800` - identity=56.7; qcov=1.01; evalue=1.92e-136; confidence=high
GO	GO:0016787 (hydrolase activity)
KEGG	-
Pfam	PF00561 (Abhydrolase_1); PF07224 (Chlorophyllase); PF12146 (Hydrolase_4); PF12697 (Abhydrolase_6)
InterPro	-
eggNOG	-
NR	GeneID:130991748

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057772107.1`
2	Cytosol	细胞质基质	1.00000	`XP_057772107.1`
3	Nucleus	细胞核	0.00000	`XP_057772107.1`
4	Chromosome	染色体	0.00000	`XP_057772107.1`
5	Centromere	着丝粒	0.00000	`XP_057772107.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:3913114`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr7:3913187`	`TG`	`T`	1bp_deletion	frameshift_variant	1	B14
`Chr7:3913187`	`TG`	`T`	1bp_deletion	CDS_variant	1	B14
`Chr7:3913295`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B86,C26,C39
`Chr7:3913318`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr7:3914837`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B79,B91
`Chr7:3914986`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B64
`Chr7:3915377`	`G`	`A`	EMS_canonical_SNV	stop_gained	14	B102,B113,B17,B2,B24,B26,B33,B8,B89,B90,C14,C23,C36,C74
`Chr7:3915381`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B110,B72,C12
`Chr7:3915433`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B24,C20,C36
`Chr7:3915492`	`G`	`GA`	1bp_insertion	frameshift_variant	26	B100,B108,B127,B138,B2,B28,B30,B40,B60,B73,B94,C2,C23,C34,C37,C4,C42,C52,C57,C63,C72,C84,C86,D1,D10,D7
`Chr7:3915609`	`C`	`T`	EMS_canonical_SNV	stop_gained	8	B10,B28,B46,B62,C22,C23,C37,C43

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057772107.1

317 aa

158

317

Chlorophyllase

Abhydrolase_1

Hydrolase_4

Abhydrolase_6

PF07224 Chlorophyllase 14-117 aa PF00561 Abhydrolase_1 25-137 aa PF12146 Hydrolase_4 26-144 aa PF12697 Abhydrolase_6 27-308 aa

XP_057772109.1

317 aa

158

317

Chlorophyllase

Abhydrolase_1

Hydrolase_4

Abhydrolase_6

PF07224 Chlorophyllase 14-117 aa PF00561 Abhydrolase_1 25-137 aa PF12146 Hydrolase_4 26-144 aa PF12697 Abhydrolase_6 27-308 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057772107.1`	Pfam	`PF07224`	Chlorophyllase	Family	14	117	2.1e-07	30.8	Chlorophyllase
`XP_057772107.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	25	137	9.4e-21	75.3	alpha/beta hydrolase fold
`XP_057772107.1`	Pfam	`PF12146`	Hydrolase_4	Domain	26	144	3.1e-12	47.1	Serine aminopeptidase, S33
`XP_057772107.1`	Pfam	`PF12697`	Abhydrolase_6	Domain	27	308	2.4e-20	74.8	Alpha/beta hydrolase family
`XP_057772109.1`	Pfam	`PF07224`	Chlorophyllase	Family	14	117	2.1e-07	30.8	Chlorophyllase
`XP_057772109.1`	Pfam	`PF00561`	Abhydrolase_1	Domain	25	137	9.4e-21	75.3	alpha/beta hydrolase fold
`XP_057772109.1`	Pfam	`PF12146`	Hydrolase_4	Domain	26	144	3.1e-12	47.1	Serine aminopeptidase, S33
`XP_057772109.1`	Pfam	`PF12697`	Abhydrolase_6	Domain	27	308	2.4e-20	74.8	Alpha/beta hydrolase family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057916126.1
AGTGGTTGGTAGATCATAATAATGACATGCGATAATATCGAGGAAGGAAAATGACTTATTAATTACTAGTATTACACAAAGTAAGCTTTTCTTTGACCTCTACTGTTCTACTTCTACAAGAATTCAGTACCTTATCTCCACCGCCGGCAAAAAAAAAATGGAGAAAATACAGCACAAATCCGTTCCTGTCAACGGCCTGCAAATGCACGTGGCGGAGGTCGGCGAGGGACCGGTAGTCCTCTTCATCCACGGCTTCCCGG...

XM_057916124.1
GTGGTTGGTAGATCATAATAATGACATGCGATAATATCGAGGAAGGAAAATGACTTATTAATTACTAGTATTACACAAAGTAAGCTTTTCTTTGACCTCTACTGTTCTACTTCTACAAGAATTCAGTACCTTATCTCCACCGCCGGCAAAAAAAAAATGGAGAAAATACAGCACAAATCCGTTCCTGTCAACGGCCTGCAAATGCACGTGGCGGAGGTCGGCGAGGGACCGGTAGTCCTCTTCATCCACGGCTTCCCGGA...

CDS

2 records

下载 CDS FASTA

LOC130991748
ATGGAGAAAATACAGCACAAATCCGTTCCTGTCAACGGCCTGCAAATGCACGTGGCGGAGGTCGGCGAGGGACCGGTAGTCCTCTTCATCCACGGCTTCCCGGAGCTCTGGTACTCGTGGCGGCACCAGATGGCATTCGTGGCGGCGCGCGGCTACCGCGCCTTGGCGCCGGATATGAGGGGCTACGGCGACACCACCGGCGCGCCGCTCGAGGACCCGTCGAAGTTCACGTTGATGCACCTGGTGGGCGACCTGATCGC...

Protein

2 records

下载 Protein FASTA

XP_057772107.1
MEKIQHKSVPVNGLQMHVAEVGEGPVVLFIHGFPELWYSWRHQMAFVAARGYRALAPDMRGYGDTTGAPLEDPSKFTLMHLVGDLIALLDAVAPNEEKVFVVGHDWGAYVAWHLAVYRPDRVRALVNLSVPFSPRNPVMTPVESFRKMYGDDHYICRFQEPGDIESVFEKVGTKEVLKNILAFREPAPLFFPKDKGFTYSTDRAPWLTEHDLDYYVSKFEKTGFTGGVNYYRAFGLNWELNAPWSGAGVIVPSKFITGEF...

XP_057772109.1
MEKIQHKSVPVNGLQMHVAEVGEGPVVLFIHGFPELWYSWRHQMAFVAARGYRALAPDMRGYGDTTGAPLEDPSKFTLMHLVGDLIALLDAVAPNEEKVFVVGHDWGAYVAWHLAVYRPDRVRALVNLSVPFSPRNPVMTPVESFRKMYGDDHYICRFQEPGDIESVFEKVGTKEVLKNILAFREPAPLFFPKDKGFTYSTDRAPWLTEHDLDYYVSKFEKTGFTGGVNYYRAFGLNWELNAPWSGAGVIVPSKFITGEF...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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