当前解析结果
SmilChr07G000577| 统一新 Gene ID | SmilChr07G000577 |
|---|---|
| 名称 | SmilChr07G000577 |
| 描述 | protein GAMETE EXPRESSED 2 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 3919307 - 3931253 / - |
| NCBI Gene ID | LOC130991749 |
|---|---|
| GeneID | 130991749 |
| locus_tag | - |
| NCBI Name | LOC130991749 |
| 原始查询 | SmilChr07G000577 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein GAMETE EXPRESSED 2 |
| 产物 | protein GAMETE EXPRESSED 2 |
| Arabidopsis | AT5G49150 (GEX2)gamete expressed 2 [Source:NCBI gene (formerly Entrezgene);Acc:834974] identity=50.8; qcov=0.88; evalue=0; confidence=high |
| Rice | Os09g0424701 (OsGEX2)- identity=40.8; qcov=0.227; evalue=1.14e-44; confidence=weak |
| GO | GO:0030036 (actin cytoskeleton organization); GO:0048235 (pollen sperm cell differentiation); GO:0051015 (actin filament binding) |
| KEGG | - |
| Pfam | PF17963 (Big_9); PF23616 (Ig_GEX2_N); PF28974 (GEX2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991749 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057772112.1 |
| 2 | Trans-golgi network | Trans-golgi network | 0.40000 | XP_057772110.1 |
| 3 | Endosome | 内体 | 0.40000 | XP_057772110.1 |
| 4 | Nucleus membrane | 核膜 | 0.20000 | XP_057772112.1 |
| 5 | Golgi apparatus | 高尔基体 | 0.20000 | XP_057772110.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:3919579 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C34 |
Chr7:3919712 |
CT |
C |
1bp_deletion | frameshift_variant | 108 | A10,A11,A14,A15,A16,A19,A20,A21,A24,A6,A8,B100,B102,B103,B111,B117,B12,B120,B125,B126,B131,B132,B136,B137,B14,B16,B17,B20,B25,B27,B28,B33,B35,B39,B40,B42,B43,B44,B48,B5,B50,B53,B55,B57,B61,B62,B64,B66,B68,B70,B71,B77,B78,B79,B8,B80,B86,B87,B89,B91,B92,B96,C1,C10,C11,C12,C13,C14,C18,C2,C23,C24,C25,C28,C30,C31,C36,C39,C4,C40,C42,C44,C47,C48,C49,C50,C51,C52,C53,C57,C6,C60,C64,C66,C67,C7,C72,C73,C79,C8,C83,C84,C86,D10,D11,D5,D6,D9 |
Chr7:3919714 |
CAT |
C |
2bp_deletion | frameshift_variant | 108 | A10,A11,A14,A15,A16,A19,A20,A21,A24,A6,A8,B100,B102,B103,B111,B117,B12,B120,B125,B126,B131,B132,B136,B137,B14,B16,B17,B20,B25,B27,B28,B33,B35,B39,B40,B42,B43,B44,B48,B5,B50,B53,B55,B57,B61,B62,B64,B66,B68,B70,B71,B77,B78,B79,B8,B80,B86,B87,B89,B91,B92,B96,C1,C10,C11,C12,C13,C14,C18,C2,C23,C24,C25,C28,C30,C31,C36,C39,C4,C40,C42,C44,C47,C48,C49,C50,C51,C52,C53,C57,C6,C60,C64,C66,C67,C7,C72,C73,C79,C8,C83,C84,C86,D10,D11,D5,D6,D9 |
Chr7:3919750 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B44,C12 |
Chr7:3919768 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B66,B92,C4 |
Chr7:3919792 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B2,C70 |
Chr7:3919798 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B41,C10 |
Chr7:3919948 |
G |
GAT |
2bp_insertion | frameshift_variant | 56 | A1,A2,A23,A25,A4,A9,B103,B106,B113,B118,B122,B123,B124,B13,B18,B24,B26,B3,B34,B36,B40,B41,B47,B48,B52,B57,B6,B60,B61,B63,B65,B67,B7,B80,B84,B9,B91,C12,C14,C16,C18,C21,C26,C29,C39,C42,C43,C45,C46,C5,C6,C60,C69,C75,C78,D2 |
Chr7:3919968 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A3 |
Chr7:3919969 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A18,A5,B139,B37,B8 |
Chr7:3919971 |
CAT |
C |
2bp_deletion | frameshift_variant | 45 | A2,A23,A25,A9,B103,B105,B106,B118,B123,B124,B13,B24,B26,B3,B34,B36,B41,B47,B48,B52,B57,B59,B6,B61,B63,B65,B67,B7,B80,B9,B91,C12,C16,C18,C21,C26,C29,C39,C42,C5,C58,C69,C75,C78,D2 |
Chr7:3920044 |
TGC |
T |
2bp_deletion | frameshift_variant | 2 | B124,B61 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057772110.1PF23616
Ig_GEX2_N 63-163 aa
PF23616
Ig_GEX2_N 173-276 aa
PF17963
Big_9 630-712 aa
PF28974
GEX2 741-841 aa
XP_057772111.1PF23616
Ig_GEX2_N 33-133 aa
PF23616
Ig_GEX2_N 143-246 aa
PF17963
Big_9 600-682 aa
PF28974
GEX2 711-811 aa
XP_057772112.1PF17963
Big_9 451-533 aa
PF28974
GEX2 562-662 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772110.1 |
Pfam | PF23616 |
Ig_GEX2_N | Domain | 63 | 163 | 2.9e-66 | 220.9 | GEX2 N-terminal Ig-like domain |
XP_057772110.1 |
Pfam | PF23616 |
Ig_GEX2_N | Domain | 173 | 276 | 2.9e-66 | 220.9 | GEX2 N-terminal Ig-like domain |
XP_057772110.1 |
Pfam | PF17963 |
Big_9 | Domain | 630 | 712 | 1.4e-13 | 52.3 | Bacterial Ig domain |
XP_057772110.1 |
Pfam | PF28974 |
GEX2 | Domain | 741 | 841 | 1.7e-42 | 144.0 | Protein GAMETE EXPRESSED 2 domain |
XP_057772111.1 |
Pfam | PF23616 |
Ig_GEX2_N | Domain | 33 | 133 | 3e-66 | 220.9 | GEX2 N-terminal Ig-like domain |
XP_057772111.1 |
Pfam | PF23616 |
Ig_GEX2_N | Domain | 143 | 246 | 3e-66 | 220.9 | GEX2 N-terminal Ig-like domain |
XP_057772111.1 |
Pfam | PF17963 |
Big_9 | Domain | 600 | 682 | 1.4e-13 | 52.3 | Bacterial Ig domain |
XP_057772111.1 |
Pfam | PF28974 |
GEX2 | Domain | 711 | 811 | 1.6e-42 | 144.1 | Protein GAMETE EXPRESSED 2 domain |
XP_057772112.1 |
Pfam | PF17963 |
Big_9 | Domain | 451 | 533 | 8.7e-15 | 56.1 | Bacterial Ig domain |
XP_057772112.1 |
Pfam | PF28974 |
GEX2 | Domain | 562 | 662 | 9.8e-43 | 144.8 | Protein GAMETE EXPRESSED 2 domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。