Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000590`

染色体: Chr07 坐标: 4023528-4027000 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000590`
名称	SmilChr07G000590
描述	UDP-glucuronic acid decarboxylase 2-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	4023528 - 4027000 / `-`

ID 对照

NCBI Gene ID	`LOC130991848`
GeneID	`130991848`
locus_tag	`-`
NCBI Name	`LOC130991848`
原始查询	`SmilChr07G000590`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	UDP-glucuronic acid decarboxylase 2-like
产物	UDP-glucuronic acid decarboxylase 2-like
Arabidopsis	`AT3G62830` (AUD1) NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:825458] identity=78.3; qcov=0.964; evalue=0; confidence=high
Rice	`Os07g0674100` (OsUXS6) - identity=79; qcov=0.931; evalue=0; confidence=high
GO	GO:0005737 (cytoplasm); GO:0042732 (D-xylose metabolic process); GO:0048040 (UDP-glucuronate decarboxylase activity); GO:0070403 (NAD+ binding)
KEGG	smil00520 (Amino sugar and nucleotide sugar metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01250 (Biosynthesis of nucleotide sugars - Salvia miltiorrhiza (redroot sage))
Pfam	PF01073 (3Beta_HSD); PF01370 (Epimerase); PF02719 (Polysacc_synt_2); PF04321 (RmlD_sub_bind); PF07993 (NAD_binding_4); PF16363 (GDP_Man_Dehyd)
InterPro	-
eggNOG	-
NR	GeneID:130991848

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	0.80000	`XP_057772246.1`
2	Endoplasmic reticulum	内质网	0.20000	`XP_057772246.1`
3	Endoplasmic reticulum membrane	内质网膜	0.20000	`XP_057772246.1`
4	Nucleus	细胞核	0.00000	`XP_057772246.1`
5	Chromosome	染色体	0.00000	`XP_057772246.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:4023714`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C50
`Chr7:4023771`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A1
`Chr7:4023783`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A1
`Chr7:4023822`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C2,C84
`Chr7:4023829`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B101
`Chr7:4023861`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr7:4023864`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C71
`Chr7:4024017`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B104,C80
`Chr7:4024943`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D5
`Chr7:4025477`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B16,C35,C46
`Chr7:4025546`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A1
`Chr7:4025549`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B2

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057772246.1

420 aa

210

420

RmlD_sub_bind

Polysacc_synt_2

Epimerase

3Beta_HSD

GDP_Man_Dehyd

NAD_binding_4

PF04321 RmlD_sub_bind 102-365 aa PF02719 Polysacc_synt_2 103-214 aa PF01370 Epimerase 103-336 aa PF01073 3Beta_HSD 104-317 aa PF16363 GDP_Man_Dehyd 104-399 aa PF07993 NAD_binding_4 159-270 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057772246.1`	Pfam	`PF04321`	RmlD_sub_bind	Domain	102	365	1.5e-10	41.3	RmlD substrate binding domain
`XP_057772246.1`	Pfam	`PF02719`	Polysacc_synt_2	Family	103	214	2.8e-07	30.8	Polysaccharide biosynthesis protein
`XP_057772246.1`	Pfam	`PF01370`	Epimerase	Family	103	336	3.8e-48	164.7	NAD dependent epimerase/dehydratase family
`XP_057772246.1`	Pfam	`PF01073`	3Beta_HSD	Family	104	317	9.5e-14	51.8	3-beta hydroxysteroid dehydrogenase/isomerase family
`XP_057772246.1`	Pfam	`PF16363`	GDP_Man_Dehyd	Domain	104	399	1.7e-56	192.8	GDP-mannose 4,6 dehydratase
`XP_057772246.1`	Pfam	`PF07993`	NAD_binding_4	Family	159	270	9.5e-11	42.1	Male sterility protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057916263.1
CACTCCCATGCAAACAAAACAATCTCACGCAAAAAAGCAAACCGAATTTTTTTTTTTTTTTTTTTAAATGTATCTATATCATATTGCATGCAATGCAAATGCATTTATCGCTAGTATCTGATTTTTCCACCTGAATTTCTCTTGTTTCTCCATTTACCAAAATCTTCATTTATTCCGCCTTCAAAAAATCATCTTTTCACAATCCGAAAATCTGTGTTTTCCTTGTGCTCTTTTTATTACAGCCATCCTACCATCTTCAG...

CDS

1 records

下载 CDS FASTA

LOC130991848
ATGGGAAGTGATGAGCAGTTGCTGCGAAGGAGCAACATCAAACATCAAAGAAAGATTTCTGTAGCTTACCCTTTTCGATATATTCTTCAAGAACAAAGATTTGTGTGTTTGTTGATCGGAATCGCGATCCCCTGTCTCGTTTTCTCCGTTATATCTTCATCTTCACGGCCGCGGAAGGGGCCGATCTCTATCTCCGATGAGTCTACGCGGATTCTCAGCCAATTTTCGTATACTTACGATGATCAAATTAGTCATTTTAG...

Protein

1 records

下载 Protein FASTA

XP_057772246.1
MGSDEQLLRRSNIKHQRKISVAYPFRYILQEQRFVCLLIGIAIPCLVFSVISSSSRPRKGPISISDESTRILSQFSYTYDDQISHFRAGGRVPLGLRGKRLRVLVTGGAGFVGSHLVDRLVARGDSVIVVDNFFTGRKENLLHHFRNPRMELIRHDVVEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGARFLLTSTSEVYGDPLEHPQSEAYWGNVNPIGVRSCYDEGKRTAETLTMDYHRG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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