当前解析结果
SmilChr07G000601| 统一新 Gene ID | SmilChr07G000601 |
|---|---|
| 名称 | SmilChr07G000601 |
| 描述 | ABC transporter C family member 4-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 4105091 - 4111675 / - |
| NCBI Gene ID | LOC130991755 |
|---|---|
| GeneID | 130991755 |
| locus_tag | - |
| NCBI Name | LOC130991755 |
| 原始查询 | SmilChr07G000601 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ABC transporter C family member 4-like |
| 产物 | ABC transporter C family member 4-like |
| Arabidopsis | AT2G47800 (ABCC4)multidrug resistance-associated protein 4 [Source:NCBI gene (formerly Entrezgene);Acc:819392] identity=60.6; qcov=1.01; evalue=0; confidence=high |
| Rice | Os01g0356400 (OsABCC8)- identity=57.5; qcov=1.02; evalue=0; confidence=high |
| GO | GO:0000325 (plant-type vacuole); GO:0005524 (ATP binding); GO:0005774 (vacuolar membrane); GO:0016887 (ATP hydrolysis activity); GO:0055085 (transmembrane transport); GO:0140359 (ABC-type transporter activity) |
| KEGG | - |
| Pfam | PF00005 (ABC_tran); PF00664 (ABC_membrane) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991755 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole | 液泡 | 1.00000 | XP_057772118.1 |
| 2 | Vacuole membrane | 液泡膜 | 1.00000 | XP_057772118.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057772118.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057772118.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057772118.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:4105433 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A25,B10,B65,B77,D1 |
Chr7:4105438 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A3,B40,B48,B71 |
Chr7:4105491 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr7:4105524 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B57,B91,D11 |
Chr7:4105586 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B49,B79,D11 |
Chr7:4105614 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B57,B91 |
Chr7:4105883 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C26,C39 |
Chr7:4106334 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B10 |
Chr7:4106412 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A3,B12,B40,B71 |
Chr7:4106762 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B44 |
Chr7:4106799 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr7:4106880 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B20,C8,C80 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057772118.1PF00664
ABC_membrane 331-597 aa
PF00005
ABC_tran 661-794 aa
PF00664
ABC_membrane 963-1182 aa
PF00005
ABC_tran 1274-1422 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772118.1 |
Pfam | PF00664 |
ABC_membrane | Family | 331 | 597 | 2e-57 | 195.7 | ABC transporter transmembrane region |
XP_057772118.1 |
Pfam | PF00005 |
ABC_tran | Domain | 661 | 794 | 3.6e-50 | 170.8 | ABC transporter |
XP_057772118.1 |
Pfam | PF00664 |
ABC_membrane | Family | 963 | 1182 | 2e-57 | 195.7 | ABC transporter transmembrane region |
XP_057772118.1 |
Pfam | PF00005 |
ABC_tran | Domain | 1274 | 1422 | 3.6e-50 | 170.8 | ABC transporter |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。