Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr07G000601

染色体: Chr07 坐标: 4105091-4111675 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr07G000601
名称SmilChr07G000601
描述ABC transporter C family member 4-like
染色体 / SeqIDChr07 / NC_080393.1
坐标与链方向4105091 - 4111675 / -

ID 对照

NCBI Gene IDLOC130991755
GeneID130991755
locus_tag-
NCBI NameLOC130991755
原始查询SmilChr07G000601

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述ABC transporter C family member 4-like
产物ABC transporter C family member 4-like
ArabidopsisAT2G47800 (ABCC4)
multidrug resistance-associated protein 4 [Source:NCBI gene (formerly Entrezgene);Acc:819392]
identity=60.6; qcov=1.01; evalue=0; confidence=high
RiceOs01g0356400 (OsABCC8)
-
identity=57.5; qcov=1.02; evalue=0; confidence=high
GOGO:0000325 (plant-type vacuole); GO:0005524 (ATP binding); GO:0005774 (vacuolar membrane); GO:0016887 (ATP hydrolysis activity); GO:0055085 (transmembrane transport); GO:0140359 (ABC-type transporter activity)
KEGG-
PfamPF00005 (ABC_tran); PF00664 (ABC_membrane)
InterPro-
eggNOG-
NRGeneID:130991755

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Vacuole 液泡 1.00000 XP_057772118.1
2 Vacuole membrane 液泡膜 1.00000 XP_057772118.1
3 Nucleus 细胞核 0.00000 XP_057772118.1
4 Chromosome 染色体 0.00000 XP_057772118.1
5 Centromere 着丝粒 0.00000 XP_057772118.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr7:4105433 G A EMS_canonical_SNV CDS_variant 5 A25,B10,B65,B77,D1
Chr7:4105438 C T EMS_canonical_SNV CDS_variant 4 A3,B40,B48,B71
Chr7:4105491 G A EMS_canonical_SNV CDS_variant 1 B140
Chr7:4105524 G A EMS_canonical_SNV CDS_variant 3 B57,B91,D11
Chr7:4105586 G A EMS_canonical_SNV CDS_variant 3 B49,B79,D11
Chr7:4105614 C T EMS_canonical_SNV CDS_variant 2 B57,B91
Chr7:4105883 C T EMS_canonical_SNV CDS_variant 2 C26,C39
Chr7:4106334 C T EMS_canonical_SNV CDS_variant 1 B10
Chr7:4106412 G A EMS_canonical_SNV CDS_variant 4 A3,B12,B40,B71
Chr7:4106762 G A EMS_canonical_SNV CDS_variant 1 B44
Chr7:4106799 C T EMS_canonical_SNV CDS_variant 1 D11
Chr7:4106880 G A EMS_canonical_SNV CDS_variant 3 B20,C8,C80

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057772118.1
1499 aa
N
1
750
1499
ABC_membrane
ABC_tran
ABC_membrane
ABC_tran
C
PF00664 ABC_membrane 331-597 aa PF00005 ABC_tran 661-794 aa PF00664 ABC_membrane 963-1182 aa PF00005 ABC_tran 1274-1422 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057772118.1 Pfam PF00664 ABC_membrane Family 331 597 2e-57 195.7 ABC transporter transmembrane region
XP_057772118.1 Pfam PF00005 ABC_tran Domain 661 794 3.6e-50 170.8 ABC transporter
XP_057772118.1 Pfam PF00664 ABC_membrane Family 963 1182 2e-57 195.7 ABC transporter transmembrane region
XP_057772118.1 Pfam PF00005 ABC_tran Domain 1274 1422 3.6e-50 170.8 ABC transporter

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057916135.1
TTATCATTTTTTCTATATTTATAATAGATTTTCCCATGTGAGTGCTGATCATATCTATTATCTTTTCGCCTCGTTAATGATTAAGTTACATTATAAAAGATTCTAGTGTCTCTCTCTCTCTCTGATCTATTTTGGAACACGAAAGTTTTGTTCAAGAAGAAAAACAGACAAGGAGGCGGCAGAAAGGGATACTGCAATCAGGAGTTTTCTTGCAAAAAATCATGTCATCTCTGTCATGGCTAACATCCACCGATTGTTCC...

CDS

1 records

下载 CDS FASTA
LOC130991755
ATGTCATCTCTGTCATGGCTAACATCCACCGATTGTTCCATCTCCACTGCTCAATCTTCTGATTCGAGCTCGTTTTCGATGATACTGAGGTGGTTAGAGTTCCTATTTCTGTCACCGTGTACGCAGAGGATTCTGTTTTTGGCCATTGATCTTGTTCTTGTATTAGCCCTTTTAGTACTAGCATTCAAGAGGGTGTACCGTAGATTCCTAGTAGGCCGAGATTCGAGCTCCAACTTTCTTGAAAAACCTCTTCTTGGAGC...

Protein

1 records

下载 Protein FASTA
XP_057772118.1
MSSLSWLTSTDCSISTAQSSDSSSFSMILRWLEFLFLSPCTQRILFLAIDLVLVLALLVLAFKRVYRRFLVGRDSSSNFLEKPLLGADSCSLRLRVTLWFKVTIVVITLLALSHAAVCVLALSRGVRSEWNGVEVLFDLFQAMANVVLLVVIAHERKFGAVSHPLPLRMYWGCSFVFVVLIFATALIRVVSNKDVGQDMEVDDMLSLVSFPLYSFLFIVAIKGSTGIRTDDGEDVDGNSRQELQESSLSDNLSGYATASL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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