当前解析结果
SmilChr07G000605| 统一新 Gene ID | SmilChr07G000605 |
|---|---|
| 名称 | SmilChr07G000605 |
| 描述 | translocase of chloroplast 159, chloroplastic |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 4128637 - 4132708 / + |
| NCBI Gene ID | LOC130991759 |
|---|---|
| GeneID | 130991759 |
| locus_tag | - |
| NCBI Name | LOC130991759 |
| 原始查询 | SmilChr07G000605 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | translocase of chloroplast 159, chloroplastic |
| 产物 | translocase of chloroplast 159%2C chloroplastic |
| Arabidopsis | AT4G02510 (TOC159)translocon at the outer envelope membrane of chloroplasts 159 [Source:NCBI gene (formerly Entrezgene);Acc:827934] identity=42.9; qcov=0.623; evalue=0; confidence=medium |
| Rice | Os05g0151400- identity=40; qcov=0.594; evalue=3.12e-155; confidence=medium |
| GO | GO:0005525 (GTP binding); GO:0009707 (chloroplast outer membrane); GO:0045036 (protein targeting to chloroplast) |
| KEGG | - |
| Pfam | PF01926 (MMR_HSR1); PF04548 (AIG1); PF11886 (TOC159_MAD) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991759 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast membrane | 叶绿体膜 | 0.80000 | XP_057772123.1 |
| 2 | Chloroplast | 叶绿体 | 0.60000 | XP_057772123.1 |
| 3 | Nucleus membrane | 核膜 | 0.20000 | XP_057772123.1 |
| 4 | Cytoplasm | 细胞质 | 0.20000 | XP_057772123.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057772123.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:4128976 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A1 |
Chr7:4129246 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B136,C28,C44 |
Chr7:4129486 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B78,C21 |
Chr7:4129498 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B6 |
Chr7:4129805 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C48,D7 |
Chr7:4129820 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B66 |
Chr7:4129878 |
CA |
C |
1bp_deletion | frameshift_variant | 1 | A3 |
Chr7:4129878 |
CA |
C |
1bp_deletion | CDS_variant | 1 | A3 |
Chr7:4130029 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B138,B33,D3 |
Chr7:4130112 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B115,B20,B24,B66,B67 |
Chr7:4130143 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B123 |
Chr7:4130205 |
C |
T |
EMS_canonical_SNV | stop_gained | 18 | A8,B102,B11,B111,B15,B17,B6,B93,C18,C29,C57,C67,C7,C72,C73,C76,C79,C84 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057772123.1PF04548
AIG1 672-808 aa
PF01926
MMR_HSR1 673-761 aa
PF11886
TOC159_MAD 978-1094 aa
PF11886
TOC159_MAD 1107-1183 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772123.1 |
Pfam | PF04548 |
AIG1 | Domain | 672 | 808 | 2.2e-19 | 70.4 | AIG1 family |
XP_057772123.1 |
Pfam | PF01926 |
MMR_HSR1 | Family | 673 | 761 | 1.8e-09 | 38.5 | 50S ribosome-binding GTPase |
XP_057772123.1 |
Pfam | PF11886 |
TOC159_MAD | Family | 978 | 1094 | 1.4e-51 | 175.7 | Translocase of chloroplast 159/132, membrane anchor domain |
XP_057772123.1 |
Pfam | PF11886 |
TOC159_MAD | Family | 1107 | 1183 | 1.4e-51 | 175.7 | Translocase of chloroplast 159/132, membrane anchor domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。