Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000606`

染色体: Chr07 坐标: 4132908-4136595 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000606`
名称	SmilChr07G000606
描述	delta(24)-sterol reductase-like
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	4132908 - 4136595 / `+`

ID 对照

NCBI Gene ID	`LOC130991803`
GeneID	`130991803`
locus_tag	`-`
NCBI Name	`LOC130991803`
原始查询	`SmilChr07G000606`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	delta(24)-sterol reductase-like
产物	delta(24)-sterol reductase-like
Arabidopsis	`AT3G19820` (DWF1) cell elongation protein / DWARF1 / DIMINUTO (DIM) [Source:NCBI gene (formerly Entrezgene);Acc:821519] identity=82.3; qcov=1; evalue=0; confidence=high
Rice	`Os10g0397400` (BRD2) - identity=84.2; qcov=0.989; evalue=0; confidence=high
GO	GO:0005737 (cytoplasm); GO:0008202 (steroid metabolic process); GO:0016020 (membrane); GO:0016628 (oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor); GO:0071949 (FAD binding)
KEGG	smil00100 (Steroid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF01565 (FAD_binding_4)
InterPro	-
eggNOG	-
NR	GeneID:130991803

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057772190.1`
2	Endoplasmic reticulum membrane	内质网膜	1.00000	`XP_057772190.1`
3	Vesicle	囊泡	0.20000	`XP_057772190.1`
4	Nucleus	细胞核	0.00000	`XP_057772190.1`
5	Chromosome	染色体	0.00000	`XP_057772190.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:4134652`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B44,C25,C3,C47
`Chr7:4134684`	`T`	`TG`	1bp_insertion	frameshift_variant	3	A10,B79,B8
`Chr7:4134684`	`T`	`TG`	1bp_insertion	CDS_variant	3	A10,B79,B8
`Chr7:4134772`	`G`	`A`	EMS_canonical_SNV	stop_gained	9	A10,B10,B107,B53,B59,B79,B97,C21,C71
`Chr7:4134798`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A7,B30,B36,B7,C24
`Chr7:4134825`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A2,B131,B56,B96
`Chr7:4134851`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B66
`Chr7:4134866`	`G`	`GT`	1bp_insertion	stop_gained,frameshift_variant	2	A16,B79
`Chr7:4134866`	`G`	`GT`	1bp_insertion	CDS_variant	2	A16,B79
`Chr7:4135022`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr7:4135037`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B66
`Chr7:4135127`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A2,B131,B56,B96

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057772190.1

563 aa

282

563

FAD_binding_4

PF01565 FAD_binding_4 109-198 aa

XP_057772191.1

563 aa

282

563

FAD_binding_4

PF01565 FAD_binding_4 109-198 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057772190.1`	Pfam	`PF01565`	FAD_binding_4	Domain	109	198	1.3e-15	58.0	FAD binding domain
`XP_057772191.1`	Pfam	`PF01565`	FAD_binding_4	Domain	109	198	1.3e-15	58.0	FAD binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057916207.1
ACTGTATACACATATCATCAATTTACGATAACTTAAATTACAATAATTATAACTCTACTCATATAATTTAATTCACATAATTACATCTACATAATTAGACATGTTTATTCACAATAATTCAAGAAATAAAATCAATAGCCCAAAACGGCAAAACGTATAGGTCAGATTTAAGTAAAGATCAATTAAGTCCAAAGAAGTAAAAATAAAATTATAAAATAGTAGTACAACACTAAAAATAAAGAAACCCTGAAATTTAGCCG...

XM_057916208.1
GATTTGGGACTTGAATGCAATATTTCAGAAATTGAAAAATGTGTTTGCGTTTGGAACAGTAGAATCGCATACTGTTCAAAACCTTATCAGAAACGCAAAATGGGATGTGATTTGCTGTACTGCTTACTGCATTTTGGGATTTGCAGTACAGTTGGAGATGGTCTAATAATTGTGTGATTGTTTGTCATAATTTTTAGAAATTGCACCAGACTTCATTTCTTCTGCCGCAGTTGCTACTGCTGCTGGATGCAATGTGGTCA...

CDS

2 records

下载 CDS FASTA

LOC130991803
ATGGCAGATCTAGAGGCCCCCCTACGTCCCAAGAGAAAGAAGATTTGGGTGGACTACTTTGTCCAGTTCCGATGGATAATTGTTATCTTTGTTGTCCTTCCAATTTCATTCACGCTATACTTCCTCACATATCTTGGGGATGTGTGGTCCGAGTCTAAATCATTCAAGAAGCGTCAAAAGGAACATGACGAAAATGTCGAGAAAGTTGTGAAGCGACTCAAGGAGAGGAACCCAAAGAAGGATGGTTTAGTCTGCACAGC...

Protein

2 records

下载 Protein FASTA

XP_057772190.1
MADLEAPLRPKRKKIWVDYFVQFRWIIVIFVVLPISFTLYFLTYLGDVWSESKSFKKRQKEHDENVEKVVKRLKERNPKKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNVLEIDQERMVARVEPLVNMGQISRVTVPMNLSLAVVAELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGRLVRATKDNEYSDLFYAIPWSQGTLGLLVAAEIKLIPIKEYMKVTYKPLVGNLKELAQGYIDSFAPR...

XP_057772191.1
MADLEAPLRPKRKKIWVDYFVQFRWIIVIFVVLPISFTLYFLTYLGDVWSESKSFKKRQKEHDENVEKVVKRLKERNPKKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNVLEIDQERMVARVEPLVNMGQISRVTVPMNLSLAVVAELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGRLVRATKDNEYSDLFYAIPWSQGTLGLLVAAEIKLIPIKEYMKVTYKPLVGNLKELAQGYIDSFAPR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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