当前解析结果
SmilChr07G000609| 统一新 Gene ID | SmilChr07G000609 |
|---|---|
| 名称 | SmilChr07G000609 |
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 4141032 - 4145894 / + |
| NCBI Gene ID | LOC130991768 |
|---|---|
| GeneID | 130991768 |
| locus_tag | - |
| NCBI Name | LOC130991768 |
| 原始查询 | SmilChr07G000609 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 产物 | putative late blight resistance protein homolog R1A-10 |
| Arabidopsis | AT3G46530 (RPP13)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:823806] identity=34.3; qcov=0.602; evalue=1.85e-71; confidence=low |
| Rice | Os07g0186500- identity=29; qcov=0.984; evalue=1.74e-75; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991768 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.60000 | XP_057772136.1 |
| 2 | Cell membrane | 细胞膜 | 0.40000 | XP_057772136.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057772136.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057772136.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057772136.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:4141678 |
ATC |
A |
2bp_deletion | frameshift_variant | 38 | A15,A18,A19,A3,B100,B11,B129,B137,B138,B15,B20,B25,B33,B39,B42,B43,B44,B55,B64,B79,B8,B81,B93,B94,B99,C17,C2,C39,C57,C6,C73,C74,C80,C87,D10,D11,D2,D3 |
Chr7:4141687 |
GAT |
G |
2bp_deletion | frameshift_variant | 20 | A15,A18,A19,B11,B119,B15,B20,B39,B55,B79,B81,B94,B99,C11,C17,C57,C71,C73,C74,D2 |
Chr7:4141727 |
CA |
C |
1bp_deletion | frameshift_variant | 1 | B136 |
Chr7:4141727 |
CA |
C |
1bp_deletion | CDS_variant | 1 | B136 |
Chr7:4141845 |
AG |
A |
1bp_deletion | frameshift_variant | 8 | B123,B132,B14,B80,B95,C3,C34,C49 |
Chr7:4141848 |
T |
TG |
1bp_insertion | frameshift_variant | 8 | B123,B132,B14,B80,B95,C3,C34,C49 |
Chr7:4141869 |
GTC |
G |
2bp_deletion | frameshift_variant | 34 | A1,A10,A15,A18,A19,B102,B11,B110,B117,B119,B140,B15,B20,B21,B23,B24,B38,B55,B60,B61,B66,B68,B75,B81,C11,C17,C2,C29,C4,C7,C72,C83,C84,C86 |
Chr7:4141902 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B102 |
Chr7:4141903 |
AG |
A |
1bp_deletion | frameshift_variant | 10 | A9,B50,B57,B77,C44,C49,C53,C6,C64,C66 |
Chr7:4141928 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B15,C72,C79,D6 |
Chr7:4141934 |
TCC |
T |
2bp_deletion | frameshift_variant | 23 | A18,A7,B10,B107,B117,B127,B19,B30,B36,B49,B62,B69,B85,B97,C21,C24,C34,C46,C5,C84,C9,D6,D7 |
Chr7:4141939 |
A |
ATG |
2bp_insertion | stop_gained,frameshift_variant | 23 | A18,A7,B10,B107,B117,B127,B19,B30,B36,B49,B62,B69,B7,B97,C21,C24,C34,C46,C5,C84,C9,D6,D7 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057772136.1PF00931
NB-ARC 148-316 aa
PF23559
WHD_DRP 401-471 aa
PF23598
LRR_14 540-828 aa
XP_057772137.1PF00931
NB-ARC 148-316 aa
PF23559
WHD_DRP 401-471 aa
PF23598
LRR_14 540-828 aa
XP_057772139.1PF00931
NB-ARC 148-316 aa
PF23559
WHD_DRP 401-471 aa
PF23598
LRR_14 540-828 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772136.1 |
Pfam | PF00931 |
NB-ARC | Domain | 148 | 316 | 8.5e-44 | 149.9 | NB-ARC domain |
XP_057772136.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 401 | 471 | 2e-20 | 73.3 | Disease resistance protein Winged helix domain |
XP_057772136.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 540 | 828 | 3.4e-15 | 56.4 | Leucine-rich repeat region |
XP_057772137.1 |
Pfam | PF00931 |
NB-ARC | Domain | 148 | 316 | 7.9e-44 | 150.0 | NB-ARC domain |
XP_057772137.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 401 | 471 | 1.9e-20 | 73.4 | Disease resistance protein Winged helix domain |
XP_057772137.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 540 | 828 | 3.1e-15 | 56.5 | Leucine-rich repeat region |
XP_057772139.1 |
Pfam | PF00931 |
NB-ARC | Domain | 148 | 316 | 8e-44 | 150.0 | NB-ARC domain |
XP_057772139.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 401 | 471 | 1.9e-20 | 73.4 | Disease resistance protein Winged helix domain |
XP_057772139.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 540 | 828 | 3.1e-15 | 56.5 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。