Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及有 accession 序列支持的文献基因名查询；未闭环名称仅提供候选导航。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr07G000613`

染色体: Chr07 坐标: 4159513-4167818 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr07G000613`
名称	SmilChr07G000613
描述	isoleucine--tRNA ligase, chloroplastic/mitochondrial
染色体 / SeqID	Chr07 / NC_080393.1
坐标与链方向	4159513 - 4167818 / `+`

ID 对照

NCBI Gene ID	`LOC130991767`
GeneID	`130991767`
locus_tag	`-`
NCBI Name	`LOC130991767`
原始查询	`SmilChr07G000613`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	isoleucine--tRNA ligase, chloroplastic/mitochondrial
产物	isoleucine--tRNA ligase%2C chloroplastic/mitochondrial
Arabidopsis	`AT5G49030` (OVA2) tRNA synthetase class I (I, L, M and V) family protein [Source:NCBI gene (formerly Entrezgene);Acc:834962] identity=73.16; qcov=0.983; evalue=0.0; confidence=high
Rice	`Os02g0778200` - identity=70.95; qcov=0.933; evalue=0.0; confidence=high
GO	GO:0000049 (tRNA binding); GO:0002161 (aminoacyl-tRNA deacylase activity); GO:0004822 (isoleucine-tRNA ligase activity); GO:0005524 (ATP binding); GO:0005829 (cytosol); GO:0006428 (isoleucyl-tRNA aminoacylation)
KEGG	smil00970 (Aminoacyl-tRNA biosynthesis - Salvia miltiorrhiza (redroot sage))
Pfam	PF00133 (tRNA-synt_1); PF06827 (zf-FPG_IleRS); PF08264 (Anticodon_1); PF09334 (tRNA-synt_1g)
InterPro	-
eggNOG	-
NR	GeneID:130991767

打开注释模块

非零投票定位候选（最多五项）

Rank	定位位置	中文	五折投票比例	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057772134.1`
2	Cytoplasm	细胞质	1.00000	`XP_057772135.1`
3	Cytosol	细胞质基质	0.80000	`XP_057772135.1`
4	Chloroplast stroma	叶绿体基质	0.60000	`XP_057772134.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr7:4159715`	`CA`	`C`	1bp_deletion	frameshift_variant	15	A8,B113,B115,B140,B35,B42,B5,B70,B74,B84,B9,C60,C7,C82,C86
`Chr7:4159751`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A2,B131,B56,B96
`Chr7:4160370`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr7:4160407`	`AC`	`A`	1bp_deletion	frameshift_variant	11	A16,A9,B137,B22,B57,B59,B7,B77,B8,C24,C34
`Chr7:4161748`	`TGC`	`T`	2bp_deletion	frameshift_variant	1	B30
`Chr7:4161748`	`TGC`	`T`	2bp_deletion	CDS_variant	1	B30
`Chr7:4161752`	`A`	`AC`	1bp_insertion	frameshift_variant	140	A1,A14,A19,A2,A20,A21,A23,A24,A25,A5,A6,A7,B1,B100,B103,B104,B105,B108,B11,B112,B117,B119,B12,B120,B123,B126,B127,B133,B135,B138,B139,B14,B140,B15,B16,B17,B18,B2,B20,B24,B25,B26,B3,B31,B32,B33,B34,B35,B37,B38,B4,B40,B43,B48,B5,B50,B51,B52,B53,B55,B56,B57,B6,B61,B62,B66,B68,B69,B70,B76,B82,B86,B88,B91,B92,B93,B94,B95,B96,B98,B99,C1,C11,C12,C14,C16,C17,C18,C2,C20,C21,C22,C23,C24,C25,C27,C28,C3,C31,C34,C36,C39,C40,C41,C48,C49,C50,C52,C54,C55,C57,C58,C6,C61,C62,C63,C64,C65,C67,C69,C7,C72,C73,C75,C76,C77,C79,C8,C80,C82,C83,C86,C87,C9,D1,D4,D5,D6,D7,D8
`Chr7:4161757`	`A`	`AT`	1bp_insertion	frameshift_variant	147	A1,A14,A19,A2,A20,A21,A22,A23,A24,A25,A3,A5,A6,A7,B1,B100,B103,B104,B105,B108,B11,B112,B117,B119,B12,B120,B123,B124,B126,B127,B133,B135,B137,B138,B139,B14,B140,B15,B16,B17,B18,B19,B2,B20,B24,B25,B26,B3,B31,B32,B33,B34,B35,B37,B38,B4,B40,B43,B44,B48,B5,B50,B51,B52,B53,B55,B56,B57,B6,B61,B62,B66,B68,B69,B70,B76,B80,B82,B86,B88,B91,B92,B93,B94,B95,B96,B98,B99,C1,C11,C12,C14,C16,C17,C18,C2,C20,C21,C22,C23,C24,C25,C27,C28,C3,C31,C34,C36,C39,C40,C41,C48,C49,C50,C52,C54,C55,C57,C58,C6,C61,C62,C63,C64,C65,C67,C69,C7,C71,C73,C75,C76,C77,C79,C8,C80,C82,C83,C86,C87,C9,D1,D4,D5,D6,D7,D8
`Chr7:4161760`	`TG`	`T`	1bp_deletion	frameshift_variant	146	A1,A14,A19,A2,A20,A21,A22,A23,A24,A25,A3,A5,A6,A7,B1,B100,B103,B104,B105,B108,B11,B112,B117,B119,B12,B120,B123,B124,B126,B127,B133,B135,B137,B138,B139,B14,B140,B15,B16,B17,B18,B19,B2,B20,B24,B25,B26,B3,B31,B32,B33,B34,B35,B37,B4,B40,B43,B44,B48,B5,B50,B51,B52,B53,B55,B56,B57,B6,B61,B62,B66,B68,B69,B70,B76,B80,B82,B86,B88,B91,B92,B93,B94,B95,B96,B98,B99,C1,C11,C12,C14,C16,C17,C2,C20,C21,C22,C23,C24,C25,C27,C28,C3,C31,C34,C36,C38,C39,C40,C41,C48,C49,C50,C52,C54,C55,C57,C58,C6,C61,C62,C63,C64,C65,C67,C69,C7,C71,C72,C73,C75,C76,C77,C79,C8,C80,C82,C83,C86,C87,C9,D1,D5,D6,D7,D8
`Chr7:4161763`	`CA`	`C`	1bp_deletion	frameshift_variant	3	B38,C54,D4
`Chr7:4161763`	`CA`	`C`	1bp_deletion	CDS_variant	3	B38,C54,D4
`Chr7:4161769`	`TCA`	`T`	2bp_deletion	frameshift_variant	156	A1,A14,A19,A2,A20,A21,A22,A23,A24,A25,A3,A5,A6,A7,B1,B100,B103,B104,B105,B108,B11,B112,B117,B119,B12,B120,B123,B124,B126,B127,B133,B135,B137,B138,B139,B14,B140,B15,B16,B17,B18,B19,B2,B20,B24,B25,B26,B3,B30,B31,B32,B33,B34,B35,B36,B37,B38,B4,B40,B43,B44,B48,B5,B50,B51,B52,B53,B55,B56,B57,B6,B61,B62,B66,B68,B69,B7,B70,B76,B80,B82,B86,B88,B91,B92,B93,B94,B95,B96,B97,B98,B99,C1,C11,C12,C14,C16,C17,C18,C2,C20,C21,C22,C23,C24,C25,C27,C28,C3,C31,C34,C36,C38,C39,C40,C41,C44,C47,C48,C49,C50,C52,C54,C55,C57,C58,C6,C61,C62,C63,C64,C65,C67,C69,C7,C71,C72,C73,C75,C76,C77,C79,C8,C80,C82,C83,C86,C87,C9,D1,D3,D4,D5,D6,D7,D8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057772134.1

1087 aa

544

1087

tRNA-synt_1

tRNA-synt_1g

Anticodon_1

zf-FPG_IleRS

PF00133 tRNA-synt_1 125-767 aa PF09334 tRNA-synt_1g 154-298 aa PF08264 Anticodon_1 812-975 aa PF06827 zf-FPG_IleRS 1046-1072 aa

XP_057772135.1

882 aa

441

882

tRNA-synt_1

Anticodon_1

zf-FPG_IleRS

PF00133 tRNA-synt_1 3-562 aa PF08264 Anticodon_1 607-770 aa PF06827 zf-FPG_IleRS 841-867 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057772134.1`	Pfam	`PF00133`	tRNA-synt_1	Domain	125	767	7e-132	440.8	tRNA synthetases class I (I, L, M and V)
`XP_057772134.1`	Pfam	`PF09334`	tRNA-synt_1g	Family	154	298	3.6e-21	76.1	tRNA synthetases class I (M)
`XP_057772134.1`	Pfam	`PF08264`	Anticodon_1	Domain	812	975	2.1e-28	99.8	Anticodon-binding domain of tRNA ligase
`XP_057772134.1`	Pfam	`PF06827`	zf-FPG_IleRS	Domain	1046	1072	2.7e-05	24.6	Zinc finger found in FPG and IleRS
`XP_057772135.1`	Pfam	`PF00133`	tRNA-synt_1	Domain	3	562	3.5e-98	329.8	tRNA synthetases class I (I, L, M and V)
`XP_057772135.1`	Pfam	`PF08264`	Anticodon_1	Domain	607	770	1.6e-28	100.2	Anticodon-binding domain of tRNA ligase
`XP_057772135.1`	Pfam	`PF06827`	zf-FPG_IleRS	Domain	841	867	2.1e-05	24.9	Zinc finger found in FPG and IleRS

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057916151.1
GGTCAATCTCCTCCAGTCGCTAACCATCATTTATCCTAAAAAAGATTTCAAGAAACGAACTTTACAAGAACCCAATTCACCAAATCAGTTGTAGATATATTCGTGTTTGTCTCTGTGTTTTTTTTTGCTGAATGGAAGATAAATCAACGTAACTGCAGAAATGAGAGCGAGTAGAAATGGACTCCACCCTCTTCACTAAACCCACAACAATTTACTCCCTCACCAAAATGGCTGTGCAGAATTTTTCTTACAGGGCTCCG...

XM_057916152.1
CTTCAGAATTTCCAAGTCAGTTATGTGCCTGGTTGGGATTGCCATGGCTTGCCAATTGAACTGAAAGTCTATGGATCAGGATGCTAGAAAGGAGCTCACACCACTAAAATTGAGAGCAAAGGCAGCAAAATTTGCCAAATCAACTGTCAAGAATCAGCTGGCAGCATTTAAGCGGTATGGCATATGGGCAGATTGGGATAATCCATATCTCACTCTTGATCCAGAGTATGAAGCTGCTCAGATTGAAGTGTTCGGGAAAA...

CDS

2 records

下载 CDS FASTA

lcl|NC_080393.1_cds_XP_057772134.1_35178
ATGGACTCCACCCTCTTCACTAAACCCACAACAATTTACTCCCTCACCAAAATGGCTGTGCAGAATTTTTCTTACAGGGCTCCGTTGCTGAAAAATTACTCATATTTTAGTCATACAACTGCTACCAGCAGCCTATTACATTTGCGAAGAAGCTCTTCAGCGAGAATCTTATCCCTCTTAAATGTGACCCGCTATTCTACTTGCTCTGGTCAAGACTACGGCTCGTCCTCAAGGCGAAGATCACGTGGACCTGTCATGGC...

lcl|NC_080393.1_cds_XP_057772135.1_35179
ATGGATCAGGATGCTAGAAAGGAGCTCACACCACTAAAATTGAGAGCAAAGGCAGCAAAATTTGCCAAATCAACTGTCAAGAATCAGCTGGCAGCATTTAAGCGGTATGGCATATGGGCAGATTGGGATAATCCATATCTCACTCTTGATCCAGAGTATGAAGCTGCTCAGATTGAAGTGTTCGGGAAAATGGCGTTGCAAGGGTATATCTATAGAGGAAGGAAACCAGTACATTGGAGTCCTTCATCTCGAACTGCTCT...

Protein

2 records

下载 Protein FASTA

XP_057772134.1
MDSTLFTKPTTIYSLTKMAVQNFSYRAPLLKNYSYFSHTTATSSLLHLRRSSSARILSLLNVTRYSTCSGQDYGSSSRRRSRGPVMAAKKSEGEKQGDGKYKHTIDLPRTAFGLRANSVVREPEIQKLWDENQVFERVSSRNTGGSFVLHDGPPYANGDLHMGHALNKILKDIINRYKLLQNFQVSYVPGWDCHGLPIELKVLQSMDQDARKELTPLKLRAKAAKFAKSTVKNQLAAFKRYGIWADWDNPYLTLDPEYEA...

XP_057772135.1
MDQDARKELTPLKLRAKAAKFAKSTVKNQLAAFKRYGIWADWDNPYLTLDPEYEAAQIEVFGKMALQGYIYRGRKPVHWSPSSRTALAEAELEYPEGHVSKSIYAIFKLVSGTTSCKLLEDFLPNLGLAIWTTTPWTIPANAAVAVNSKLQYAVVEVHSNSVDPTASSASKEKKLGRILKENNNLHLIVGLDLVPTLEAKWGVKLTVKATVTGTDLENCRYVHPVESRECPVVIGGDYITTESGTGLVHTAPGHGQEDYV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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