当前解析结果
SmilChr07G000619| 统一新 Gene ID | SmilChr07G000619 |
|---|---|
| 名称 | SmilChr07G000619 |
| 描述 | heavy metal-associated isoprenylated plant protein 35-like |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 4196273 - 4197842 / - |
| NCBI Gene ID | LOC130991877 |
|---|---|
| GeneID | 130991877 |
| locus_tag | - |
| NCBI Name | LOC130991877 |
| 原始查询 | SmilChr07G000619 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | heavy metal-associated isoprenylated plant protein 35-like |
| 产物 | heavy metal-associated isoprenylated plant protein 35-like |
| Arabidopsis | AT1G56210 (AT1G56210)Heavy metal transport/detoxification superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:842074] identity=31.9; qcov=1.12; evalue=2.35e-31; confidence=low |
| Rice | Os01g0125600 (P0044F08.14)- identity=53.6; qcov=0.273; evalue=8.91e-25; confidence=weak |
| GO | GO:0046872 (metal ion binding) |
| KEGG | - |
| Pfam | PF00403 (HMA) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991877 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057772299.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057772299.1 |
| 3 | Nucleus | 细胞核 | 0.40000 | XP_057772299.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057772299.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057772299.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:4196535 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C44 |
Chr7:4196561 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B29,C15,C4 |
Chr7:4196614 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C33,C46 |
Chr7:4196618 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B51,C32,C72 |
Chr7:4196678 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B95 |
Chr7:4196697 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B87,D6 |
Chr7:4196861 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B29,C15,C4 |
Chr7:4196887 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A25,B71 |
Chr7:4196942 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr7:4197050 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B114,B65,B72,C83 |
Chr7:4197077 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B117,C37,C51 |
Chr7:4197149 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B112,B121,B137,C39 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057772299.1PF00403
HMA 22-78 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772299.1 |
Pfam | PF00403 |
HMA | Domain | 22 | 78 | 1.9e-14 | 54.5 | Heavy-metal-associated domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。