当前解析结果
SmilChr07G000635| 统一新 Gene ID | SmilChr07G000635 |
|---|---|
| 名称 | SmilChr07G000635 |
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 4283516 - 4286613 / - |
| NCBI Gene ID | LOC130991774 |
|---|---|
| GeneID | 130991774 |
| locus_tag | - |
| NCBI Name | LOC130991774 |
| 原始查询 | SmilChr07G000635 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 产物 | putative late blight resistance protein homolog R1A-10 |
| Arabidopsis | AT1G53350 (AT1G53350)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:841771] identity=27.3; qcov=1; evalue=2.46e-84; confidence=low |
| Rice | Os07g0186500- identity=30.3; qcov=0.92; evalue=1.01e-86; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991774 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057772148.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057772148.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057772148.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057772148.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057772148.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:4283822 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B89 |
Chr7:4283881 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A8 |
Chr7:4283891 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B22,C49,C6 |
Chr7:4283917 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B140,B31,B68,C72 |
Chr7:4283918 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B122,B44,B99,C27,C83 |
Chr7:4283923 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B15,C72,C79 |
Chr7:4283983 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B112,B137,B90,B92,C8 |
Chr7:4283984 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B101,C32,C68 |
Chr7:4284156 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B105 |
Chr7:4284242 |
GAA |
G |
2bp_deletion | frameshift_variant | 53 | A1,A25,A6,B1,B106,B108,B11,B118,B12,B21,B23,B38,B39,B4,B40,B46,B48,B52,B59,B6,B61,B67,B68,B69,B71,B77,B81,B86,B89,B91,C12,C14,C17,C18,C29,C30,C41,C44,C53,C57,C59,C60,C64,C65,C66,C69,C72,C74,C76,C84,C9,D1,D8 |
Chr7:4284259 |
CT |
C |
1bp_deletion | frameshift_variant | 51 | A1,A25,A6,B1,B106,B108,B11,B118,B12,B21,B23,B38,B39,B4,B40,B46,B48,B52,B59,B6,B61,B67,B68,B69,B71,B77,B81,B86,B89,C12,C17,C18,C29,C30,C41,C44,C53,C57,C59,C60,C64,C65,C66,C69,C72,C74,C76,C84,C9,D1,D8 |
Chr7:4284261 |
CGG |
C |
2bp_deletion | frameshift_variant | 51 | A1,A25,A6,B1,B106,B108,B11,B118,B12,B21,B23,B38,B39,B4,B40,B46,B48,B52,B59,B6,B61,B67,B68,B69,B71,B77,B81,B86,B89,C12,C17,C18,C29,C30,C41,C44,C53,C57,C59,C60,C64,C65,C66,C69,C72,C74,C76,C84,C9,D1,D8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057772148.1PF00931
NB-ARC 170-342 aa
PF23559
WHD_DRP 427-495 aa
PF23598
LRR_14 563-849 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772148.1 |
Pfam | PF00931 |
NB-ARC | Domain | 170 | 342 | 1.1e-42 | 146.2 | NB-ARC domain |
XP_057772148.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 427 | 495 | 4.7e-21 | 75.3 | Disease resistance protein Winged helix domain |
XP_057772148.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 563 | 849 | 3e-15 | 56.5 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。