当前解析结果
SmilChr07G000641| 统一新 Gene ID | SmilChr07G000641 |
|---|---|
| 名称 | SmilChr07G000641 |
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 4316350 - 4318917 / - |
| NCBI Gene ID | LOC130993087 |
|---|---|
| GeneID | 130993087 |
| locus_tag | - |
| NCBI Name | LOC130993087 |
| 原始查询 | SmilChr07G000641 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 产物 | putative late blight resistance protein homolog R1A-10 |
| Arabidopsis | AT1G53350 (AT1G53350)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:841771] identity=26.5; qcov=1.02; evalue=2.69e-73; confidence=low |
| Rice | Os07g0186500- identity=30.8; qcov=0.961; evalue=2.06e-82; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130993087 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057773794.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057773794.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057773794.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057773794.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057773794.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:4316367 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | C83 |
Chr7:4316367 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C83 |
Chr7:4316373 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A21,B101 |
Chr7:4316397 |
G |
A |
EMS_canonical_SNV | stop_gained | 2 | A16,C62 |
Chr7:4316397 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A16,C62 |
Chr7:4316489 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B112,B137,B90,B92,C8 |
Chr7:4316520 |
G |
A |
EMS_canonical_SNV | stop_gained | 35 | A3,B1,B100,B112,B128,B132,B137,B138,B2,B20,B21,B24,B27,B31,B34,B55,B63,B66,B67,B76,B83,B86,B90,B92,B94,C23,C29,C38,C39,C40,C43,C56,C8,D3,D9 |
Chr7:4316535 |
G |
A |
EMS_canonical_SNV | stop_gained | 3 | B26,B95,C5 |
Chr7:4316535 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B26,B95,C5 |
Chr7:4316559 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C83 |
Chr7:4316631 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C83 |
Chr7:4316649 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A11,B135,C64,C66,C85 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057773794.1PF00931
NB-ARC 147-315 aa
PF23559
WHD_DRP 400-468 aa
PF23598
LRR_14 537-839 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057773794.1 |
Pfam | PF00931 |
NB-ARC | Domain | 147 | 315 | 1.8e-41 | 142.3 | NB-ARC domain |
XP_057773794.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 400 | 468 | 2.3e-20 | 73.1 | Disease resistance protein Winged helix domain |
XP_057773794.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 537 | 839 | 1.8e-11 | 44.1 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。