当前解析结果
SmilChr07G000652| 统一新 Gene ID | SmilChr07G000652 |
|---|---|
| 名称 | SmilChr07G000652 |
| 描述 | probable protein phosphatase 2C 34 |
| 染色体 / SeqID | Chr07 / NC_080393.1 |
| 坐标与链方向 | 4391822 - 4394940 / + |
| NCBI Gene ID | LOC130991864 |
|---|---|
| GeneID | 130991864 |
| locus_tag | - |
| NCBI Name | LOC130991864 |
| 原始查询 | SmilChr07G000652 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable protein phosphatase 2C 34 |
| 产物 | probable protein phosphatase 2C 34 |
| Arabidopsis | AT5G27930 (AT5G27930)Protein phosphatase 2C family protein [Source:NCBI gene (formerly Entrezgene);Acc:832860] identity=55.9; qcov=0.957; evalue=3.26e-140; confidence=high |
| Rice | Os05g0358500 (OsPP2C48)- identity=51.7; qcov=0.968; evalue=3.61e-120; confidence=high |
| GO | GO:0004722 (protein serine/threonine phosphatase activity); GO:0006470 (protein dephosphorylation) |
| KEGG | - |
| Pfam | PF00481 (PP2C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:130991864 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 0.80000 | XP_057772266.1 |
| 2 | Nucleus | 细胞核 | 0.40000 | XP_057772266.1 |
| 3 | Cytoplasm | 细胞质 | 0.40000 | XP_057772266.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057772266.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057772266.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr7:4392560 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B125,B63,B86,C12 |
Chr7:4392616 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A8,B26,B85,B95,D11 |
Chr7:4392624 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C64,C66 |
Chr7:4392653 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B34 |
Chr7:4392679 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A8,B26,B85,B95,D11 |
Chr7:4392989 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B19,C1 |
Chr7:4393089 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A10,C50 |
Chr7:4393136 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B38,B39,B5,C17 |
Chr7:4393563 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
Chr7:4393575 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B104,B118,B34,B91 |
Chr7:4393614 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C44,C59,D10 |
Chr7:4393733 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C28 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057772266.1PF00481
PP2C 84-331 aa
XP_057772267.1PF00481
PP2C 84-331 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057772266.1 |
Pfam | PF00481 |
PP2C | Family | 84 | 331 | 2.4e-44 | 152.6 | Protein phosphatase 2C |
XP_057772267.1 |
Pfam | PF00481 |
PP2C | Family | 84 | 331 | 2.4e-44 | 152.6 | Protein phosphatase 2C |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。